View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_11 (Length: 327)
Name: NF3838_low_11
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 9855142 - 9855294
Alignment:
| Q |
122 |
cttcttaactttgcacctttatttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatattaannnnnnncaagtaactgtaacatt |
221 |
Q |
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| T |
9855142 |
cttcttaactttgcacctttatttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatatt---ttttttcaaataactgtaacatt |
9855238 |
T |
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| Q |
222 |
tgnnnnnnntatttcaggttacttttaatttccaatatacaattttaattatttttt |
278 |
Q |
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| T |
9855239 |
tgaaaaaaatatttcaggttatttttaatttccaatatacaa-tttaattatttttt |
9855294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9855021 - 9855102
Alignment:
| Q |
1 |
aagaaggcaacatctgacaacagtgtcctactcgaaagtcattcaatgtcaacaatccaaggatctcatgttcggcatgatc |
82 |
Q |
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| T |
9855021 |
aagaaggcaacatctaacgaaagtgtcctactcaaaagtcatttaatgtcaacaatccaaggatctcatgtccgacatgatc |
9855102 |
T |
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