View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_14 (Length: 270)
Name: NF3838_low_14
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 1127726 - 1127969
Alignment:
| Q |
11 |
gatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgctc |
110 |
Q |
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| T |
1127726 |
gatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgctc |
1127825 |
T |
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| Q |
111 |
ccacgcttgagctccgtcagcttatcccagccgttgattattcgcgcggaatcgaaacatatccccttcttgtattgcaggtgcgtttcaatttatcttc |
210 |
Q |
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| T |
1127826 |
ccacgcttgagctccgccagcttatcccagccgttgattattcgcgcggaatcgaaacatatccccttcttgtattgcaggtgcgtttcaatttatcttc |
1127925 |
T |
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| Q |
211 |
aattatttattagtttataaactcctattttgaaagtaacttat |
254 |
Q |
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| T |
1127926 |
aattatttattagtttataaactcctattttgaaagtaacttat |
1127969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 1108316 - 1108395
Alignment:
| Q |
143 |
gttgattattcgcgcggaatcgaaacatatccccttctt-gtattgcaggtgcgtttcaatttatcttcaattatttatta |
222 |
Q |
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| T |
1108316 |
gttgattattcgagcggaatcgaaacgtatccccctcttggtgttgcaggtgtgtttccattt-tcttcaattatttatta |
1108395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 27358965 - 27358821
Alignment:
| Q |
9 |
gagatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgc |
108 |
Q |
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| T |
27358965 |
gagatgaagatggtcgtgttgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgataccaccgcttccgttgatgacttcagtgactttgc |
27358866 |
T |
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| Q |
109 |
tcccacgcttgagctccgtcagcttatcccagccgttgattattc |
153 |
Q |
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| T |
27358865 |
tccaacacttcgcctccgtcagttaatcccagccgtggattattc |
27358821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 45408141 - 45408285
Alignment:
| Q |
9 |
gagatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgc |
108 |
Q |
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| T |
45408141 |
gagatgaagatggtcgcattgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgataccaccgcttccgttgatgacttcggtgactttgc |
45408240 |
T |
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| Q |
109 |
tcccacgcttgagctccgtcagcttatcccagccgttgattattc |
153 |
Q |
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| T |
45408241 |
tccaacacttcgcctccgtcagttaatcccagccgtggattattc |
45408285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 31967182 - 31966975
Alignment:
| Q |
15 |
aagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgctcccac |
114 |
Q |
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|||| |||||||| ||||| || ||||| |||||||||||||||||||| || |||| ||| | || | ||||||||||| |||||||||||||| |
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| T |
31967182 |
aagacggtcgtgtagagatcgactgtgacggtcaaggggtgctctttgttgaagctgccactaactcattcatagatgattttggtgactttgctcccac |
31967083 |
T |
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| Q |
115 |
gcttgagctccgtcagcttatcccagccgttgattattcgcgcggaatcgaaacatatccccttcttgtattgcaggtgcgtttcaatttatcttcaatt |
214 |
Q |
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| T |
31967082 |
attgcacttgggccagcttattcccattgttgattactcgcgcggaatcgaaacatatcccctcctagtgttgcaggtatgtttcaattttttttcattt |
31966983 |
T |
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| Q |
215 |
atttatta |
222 |
Q |
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| |||||| |
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| T |
31966982 |
acttatta |
31966975 |
T |
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