View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_19 (Length: 228)
Name: NF3838_low_19
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 18256069 - 18256281
Alignment:
| Q |
5 |
tatccgtatttgtgcttcatatacatgtttacttaatataaaatgagaagtgcnnnnnnnnnnnnnnnccaaatattcaaggaaataaaacacatacatt |
104 |
Q |
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| T |
18256069 |
tatccgtatttgtgcttcatatacatgtttacttaatagaaaatgagaagtgcacaaaaaaaaaaa--ccaaatattcaagaaaataaaacacatacatt |
18256166 |
T |
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| Q |
105 |
tattcatctcatgtcacaaatttctcaatacatgacaataccagaaacaaacacaaacaaataaattaagaaaacccagtaacatgaagattcctcactc |
204 |
Q |
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| T |
18256167 |
tattcatctcatgtcacaaatttctcaatacatgacaataccagaaacaaacacaaacaaataa---aagaaaagccagtaacatgaagattcctcactc |
18256263 |
T |
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| Q |
205 |
tttcatatgaataacatc |
222 |
Q |
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| T |
18256264 |
tttcatatgaataacatc |
18256281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 18246358 - 18246300
Alignment:
| Q |
74 |
caaatattcaaggaaataaaacacatacatttattcatctcatgtcacaaatttctcaa |
132 |
Q |
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| T |
18246358 |
caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttctcaa |
18246300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 18253338 - 18253287
Alignment:
| Q |
172 |
aagaaaacccagtaa-catgaagattcctcactctttcatatgaataacatc |
222 |
Q |
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| T |
18253338 |
aagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatc |
18253287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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