View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_5 (Length: 405)
Name: NF3838_low_5
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 5365035 - 5365403
Alignment:
| Q |
19 |
acaaagccctaacatcatcacaaacttcctcactaaacgccaccgtattaaaccctcgaccatgcaaacgccgtgaccacctcaccgcagtttctctccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365035 |
acaaagccctaacatcatcacaaacttcctcactaaacgccaccgtattaaaccctcgaccatgcaaacgccgtgaccacctcaccgcagtttctctccg |
5365134 |
T |
|
| Q |
119 |
ttcaatcgactccgccggagcacatgccaccaaatcaactattcctctccctgcttccctttcaagcatcaaacgctcgttactcgtcttcggaaaactc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365135 |
ttcaatcgactccgccggagcacatgccaccaaatcaactatccctctccctgcttccctttcaagcatcaaacgctcgttactcgtcttcggaaaactc |
5365234 |
T |
|
| Q |
219 |
tcttctaatgcttcaaagtaaaccctaaaccaccttaaacactcttcaaaaccatttacaaattcatatccttcattaccaaaatttaaatcagcctcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365235 |
tcttctaatgcttcaaagtaaaccctaaaccaccttaaacactcttcaaaaccattcacaaattcatatccttcattaccaaaatttaaatcagcctcct |
5365334 |
T |
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| Q |
319 |
cttcaaccattgttactatcctaggccgcaacgcgatcaacgaagctatcaacgagtcacgacggttat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365335 |
cttcaaccattgttactatcctaggccgcaacgcgatcaacgaagctatcaacgagtcacgacggttat |
5365403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 39988276 - 39988026
Alignment:
| Q |
21 |
aaagccctaacatcatcacaaacttcctcactaaacgccaccgtattaaaccctcgaccatgcaaacgccgtgaccacctcaccgcagtttctctccgtt |
120 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| | || ||||| | |||| ||||| | | | |
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| T |
39988276 |
aaagccctaacatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttcacgtctct |
39988177 |
T |
|
| Q |
121 |
caatcgactccgccggagcacatgccaccaaatcaactattcctctccctgcttccctttcaagcatcaaacgctcgttactcgtcttcggaaaactctc |
220 |
Q |
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| | ||||| ||| |||| || ||||||||||| || |||||||| ||||| ||||| |||||||| | ||| |||| || | | |||||| || |
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| T |
39988176 |
ccactgactcataaggatcacaagcaaccaaatcaacaatacctctcccagcttctctttctagcatcaacctctcactacttgttcttgaaaaactttc |
39988077 |
T |
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| Q |
221 |
ttctaatgcttcaaagtaaaccctaaaccaccttaaacactcttcaaaacc |
271 |
Q |
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|| | ||||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
39988076 |
atcaagtgcttcaaaataaaccctaaaccatcttaaacactctttaaaacc |
39988026 |
T |
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