View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_8 (Length: 342)
Name: NF3838_low_8
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 14665687 - 14665356
Alignment:
| Q |
1 |
aatgcataacacaaaactatctttgtgcaagacca---tagtcacaaaattatgccatcatgttttactctcgtttcccccc-aacttattttatactct |
96 |
Q |
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| T |
14665687 |
aatgcataacacaaaactatctttgtgcaagaccaccatagtcacaaaattatgccatcatgttttactctcgtttcccccccaacttattttatactct |
14665588 |
T |
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| Q |
97 |
tgttactgtaatatgcattacatcaccatccacggcatgaaaaaggacttgtaaaaatttagggtcttgtaattgtataatggaataagcttaataataa |
196 |
Q |
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| T |
14665587 |
tgttactgtaatatgcattacatc--catccacggcatgaaaaaggacttgtaaaaatttagggtcttgtaattgtataatagaataagcttaataataa |
14665490 |
T |
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| Q |
197 |
taagtagcggtacatattattcgtccttttcgtccttacatatatgctaaggagctatgtgagtggtaaagtaggaccatgcttaattgtccaaaaacaa |
296 |
Q |
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| T |
14665489 |
taagtagcggtacatattattcgtccttttcgtccttacatatatgctaaggagctatgtgagtggtaaagtaggaccatgcttaattgtccaaaaacaa |
14665390 |
T |
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| Q |
297 |
atgccaccatattgcagaccagatctagtattat |
330 |
Q |
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| T |
14665389 |
atgccaccatattgcagaccaggtctagtgttat |
14665356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 14664536 - 14664483
Alignment:
| Q |
252 |
tatgtgagtggtaaagtaggaccatgcttaattgtccaaaaacaaatgccaccat |
306 |
Q |
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| T |
14664536 |
tatgtgagtggtaaagtagggtcatgcttaattgtccaaaaac-aatgccaccat |
14664483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 14664716 - 14664635
Alignment:
| Q |
96 |
ttgttactgtaatatgcattacatcaccatccacggcatgaaaaa-ggacttgt-aaaaatttagggtcttgtaattgtata |
175 |
Q |
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| T |
14664716 |
ttgttactataatatgcattacatcaccatccacaacatgaaaaagggacttctaaaaaaatcagggtcttataattgtata |
14664635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 14664840 - 14664796
Alignment:
| Q |
7 |
taacacaaaactatctttgtgcaagaccatagtcacaaaattatg |
51 |
Q |
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| T |
14664840 |
taacacaaaactatctttgtgcaatatcatagccccaaaattatg |
14664796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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