View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_9 (Length: 336)
Name: NF3838_low_9
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 54289649 - 54289337
Alignment:
| Q |
14 |
ataacatgtactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccaca |
113 |
Q |
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| T |
54289649 |
ataacatgtactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccaca |
54289550 |
T |
|
| Q |
114 |
ccaggtggttttttccagcttctatccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactggtagcaa |
213 |
Q |
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| T |
54289549 |
ccaggtggttttttccagcttctatccaacccactaacctgtcatattcatattaggcaaaatagggtgaatattaagcattagctgaaactggtagcaa |
54289450 |
T |
|
| Q |
214 |
gaaaaaccagcaaataacagttatgattctgatcaagaaataacaccagagtgtcagcaaattcttcaactttgccgaatgattccatcttagtgaaatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289449 |
gaaaaaccagcaaataacagttatgattctgatcaagaaataacaccagagtgtcagcaaattcttcaactttgccgaatgattccatcttagtgaaatc |
54289350 |
T |
|
| Q |
314 |
tggacccactcct |
326 |
Q |
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||||||||||||| |
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| T |
54289349 |
tggacccactcct |
54289337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 11684623 - 11684913
Alignment:
| Q |
14 |
ataacatgtactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccaca |
113 |
Q |
| |
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||||||||||||| || |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684623 |
ataacatgtactgcaaaataatgcagcaactttcaatgacatttaagagtaaaagcatgcacctttagatgatttacaatctatgagtttagcagccaca |
11684722 |
T |
|
| Q |
114 |
ccaggtggttttttccagcttctatccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactggtagcaa |
213 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
11684723 |
ccaggtggttttttccagcttctgtccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactgaaagtaa |
11684822 |
T |
|
| Q |
214 |
gaaaaaccagcaaataacagttatgattctgatcaagaaataacaccagagtgtcagcaaattcttcaactttgccgaatgattccatctta |
305 |
Q |
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| |||| ||||||| || |||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||||| ||||| |
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| T |
11684823 |
g-aaaatcagcaaacaatagttatgaatctgatcaagaaatgacaccagagtgtcatcaaattcttcaacttttccgaataattccttctta |
11684913 |
T |
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