View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_high_1 (Length: 697)
Name: NF3839_high_1
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 95 - 620
Target Start/End: Original strand, 49180320 - 49180844
Alignment:
| Q |
95 |
gaaaatgctgctagttgctattgaacgcggggaaggattcctgttaaattctttgtttaatgcagtgacttacaaaaatggctatatgccacgtataaga |
194 |
Q |
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| T |
49180320 |
gaaaatgctgctagttgctattgaacgcggggaaggattcctgttaaattctttgttcaatgcagtgacttacaaaaatggctatatgccacgtataaga |
49180419 |
T |
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| Q |
195 |
tgagtttgctgctacagggctggaagtcaggtttgagactgtgtctgtgttttgtttgatcttcctttcgttcactatgcatactattcatggttcctca |
294 |
Q |
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| T |
49180420 |
tgagtttgctgctacagggctggaagtcaggtttgagactgtgtctgtgttttgtttgatcttcctttcgttcactatgcatactattcatggttcctca |
49180519 |
T |
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| Q |
295 |
catgttattatagataaaatgatatgcccaatccttgcnnnnnnnntggtgagttttgtgagatacgcctgtgcaagcatggatcaatctgtgttttttg |
394 |
Q |
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| T |
49180520 |
catgttattacagataaaatgatatgcccaatccttgcgaaaaaa-tggtgagttttgtgagatacgcctgtgcaagcatggatcaatctgtgtttttct |
49180618 |
T |
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| Q |
395 |
gaaagaaacttttgtctggattgtaagcgttcgctgtgctgtttctcttgttgtcttgaatttaatttcaatttgctatgcccctttgtggttctgatcc |
494 |
Q |
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| T |
49180619 |
gaaagaaacttttgtctggattgtaagcgttcgctgtgctgtttctcttgttgtcttgaatttaatttcaatttgctatgcccctttgtggttctgatcc |
49180718 |
T |
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| Q |
495 |
aataactcaccgaagtctcaagttttcataaattttctgcaatctgatacaaaactctttaaaaacagccctgcttgtcgttatgcttgtataatttgtt |
594 |
Q |
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| T |
49180719 |
aataactcacccaagtctcaagttttcataaattttctgcaatctgatacaaaactctttaaaaacagccctgcttgtctttatgcttgtataatttgtt |
49180818 |
T |
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| Q |
595 |
cttggtttaggcggtgaaccgaacta |
620 |
Q |
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| T |
49180819 |
cttggtttaggcggtgaaccgaacta |
49180844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 49180154 - 49180247
Alignment:
| Q |
7 |
gaagcataggtcattaaaggtgaaaatcactaaatttgtccttcacctattgcatggttgacaactacataattgttaacttttgtgggaaaat |
100 |
Q |
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| T |
49180154 |
gaagcttaggtcattaaaggtgaaaatcactaaatttgtccttcacctattgcatggttgacaactacataattgttaacttttgtgggaaaat |
49180247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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