View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3839_high_11 (Length: 245)

Name: NF3839_high_11
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3839_high_11
NF3839_high_11
[»] scaffold0182 (1 HSPs)
scaffold0182 (41-235)||(21941-22135)
[»] chr1 (22 HSPs)
chr1 (45-123)||(51007243-51007321)
chr1 (59-126)||(33081090-33081157)
chr1 (123-235)||(5085118-5085235)
chr1 (127-235)||(32047403-32047516)
chr1 (182-235)||(44335310-44335363)
chr1 (45-126)||(25154331-25154416)
chr1 (124-235)||(33231798-33231914)
chr1 (125-235)||(29140683-29140798)
chr1 (122-230)||(16582489-16582602)
chr1 (182-235)||(48721897-48721950)
chr1 (186-234)||(9684748-9684796)
chr1 (125-240)||(30336018-30336138)
chr1 (182-234)||(46495330-46495382)
chr1 (184-240)||(46591125-46591181)
chr1 (184-235)||(44652890-44652941)
chr1 (173-235)||(47643554-47643614)
chr1 (182-220)||(44163253-44163291)
chr1 (125-209)||(5322078-5322167)
chr1 (182-235)||(8877793-8877846)
chr1 (182-235)||(30898592-30898645)
chr1 (155-235)||(44395524-44395609)
chr1 (173-221)||(27531111-27531159)
[»] chr4 (16 HSPs)
chr4 (125-223)||(16070391-16070494)
chr4 (125-232)||(46729266-46729377)
chr4 (119-235)||(52225973-52226094)
chr4 (125-235)||(39237619-39237738)
chr4 (173-235)||(5932899-5932961)
chr4 (173-235)||(50782791-50782853)
chr4 (122-221)||(20262438-20262542)
chr4 (125-235)||(5448622-5448737)
chr4 (69-108)||(17799214-17799253)
chr4 (184-235)||(43800832-43800883)
chr4 (189-235)||(18683563-18683609)
chr4 (185-235)||(22750872-22750922)
chr4 (184-234)||(45628105-45628155)
chr4 (178-235)||(5167997-5168054)
chr4 (173-234)||(30153253-30153314)
chr4 (184-240)||(13096567-13096623)
[»] chr2 (10 HSPs)
chr2 (125-235)||(8065102-8065217)
chr2 (129-209)||(13534379-13534463)
chr2 (173-235)||(28264981-28265043)
chr2 (125-235)||(41665671-41665785)
chr2 (125-235)||(28733785-28733898)
chr2 (125-223)||(9718214-9718317)
chr2 (184-235)||(14420701-14420752)
chr2 (185-235)||(7255626-7255676)
chr2 (125-230)||(35178828-35178938)
chr2 (173-221)||(27749525-27749573)
[»] chr7 (19 HSPs)
chr7 (45-123)||(21761771-21761849)
chr7 (45-126)||(21020833-21020918)
chr7 (134-235)||(35128355-35128459)
chr7 (122-235)||(48767521-48767639)
chr7 (184-235)||(36726203-36726254)
chr7 (174-235)||(33181309-33181370)
chr7 (125-235)||(36116281-36116396)
chr7 (173-235)||(20123463-20123525)
chr7 (135-220)||(37673707-37673797)
chr7 (125-221)||(4089544-4089645)
chr7 (125-235)||(1324668-1324783)
chr7 (125-172)||(29723421-29723468)
chr7 (173-235)||(10685098-10685160)
chr7 (185-235)||(21388267-21388317)
chr7 (173-235)||(37048048-37048110)
chr7 (173-235)||(48610166-48610228)
chr7 (182-235)||(2276607-2276660)
chr7 (182-235)||(25750390-25750443)
chr7 (182-235)||(49100693-49100746)
[»] chr5 (16 HSPs)
chr5 (125-235)||(21574909-21575024)
chr5 (125-235)||(25017703-25017818)
chr5 (125-223)||(10933966-10934069)
chr5 (125-235)||(36177252-36177367)
chr5 (177-235)||(5845193-5845251)
chr5 (185-235)||(12895238-12895288)
chr5 (173-235)||(15898492-15898554)
chr5 (182-234)||(129632-129684)
chr5 (173-229)||(10523309-10523365)
chr5 (125-235)||(4738590-4738705)
chr5 (125-223)||(34877626-34877729)
chr5 (185-223)||(15967153-15967191)
chr5 (173-235)||(27587851-27587913)
chr5 (125-220)||(27798116-27798216)
chr5 (182-234)||(33862845-33862897)
chr5 (173-221)||(35569048-35569096)
[»] chr3 (18 HSPs)
chr3 (125-235)||(30476000-30476115)
chr3 (45-122)||(48343885-48343962)
chr3 (173-235)||(26121344-26121406)
chr3 (173-235)||(46048534-46048596)
chr3 (173-235)||(46435762-46435824)
chr3 (136-235)||(40645644-40645748)
chr3 (183-234)||(50092690-50092741)
chr3 (173-234)||(26517248-26517309)
chr3 (174-223)||(41308820-41308869)
chr3 (186-235)||(43187125-43187174)
chr3 (45-126)||(48343417-48343500)
chr3 (173-233)||(35765680-35765740)
chr3 (182-234)||(41727271-41727323)
chr3 (72-107)||(3084227-3084262)
chr3 (173-235)||(39617282-39617344)
chr3 (182-235)||(26043040-26043093)
chr3 (182-235)||(50363048-50363101)
chr3 (72-108)||(45868552-45868588)
[»] chr8 (14 HSPs)
chr8 (173-235)||(25198302-25198364)
chr8 (125-219)||(4273955-4274054)
chr8 (125-235)||(37956082-37956196)
chr8 (125-235)||(40337222-40337337)
chr8 (125-220)||(39543709-39543809)
chr8 (125-235)||(25184990-25185105)
chr8 (125-235)||(38770218-38770333)
chr8 (129-234)||(57220-57330)
chr8 (125-234)||(7772472-7772586)
chr8 (185-235)||(14846952-14847002)
chr8 (125-235)||(24512198-24512313)
chr8 (182-235)||(2562761-2562814)
chr8 (184-229)||(14522641-14522686)
chr8 (186-235)||(26878759-26878808)
[»] chr6 (6 HSPs)
chr6 (125-234)||(5895691-5895805)
chr6 (173-235)||(1763826-1763888)
chr6 (125-234)||(4250690-4250804)
chr6 (185-230)||(15981819-15981864)
chr6 (182-235)||(16350543-16350596)
chr6 (173-221)||(9461306-9461354)


Alignment Details
Target: scaffold0182 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 21941 - 22135
Alignment:
Q  41 aaaatgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaattaagtactcccttcgtccct 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21941 aaaatgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaattaagtactccctccgtccct 22040  T
Q  141 taatgtaggcacatattgtccttttcacatttgaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22041 taatgtaggcacatattgtctttttcacatttgaaatgttatcagtgtaattaatgtgtttgttttgtgtattaatattaccatattgtcctttg 22135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 51007243 - 51007321
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaattaa 123  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  51007243 tgaaattaaatgcaaattaattttttctccctctaattttctccataacgaataatcaatgaaattaaatgcaaattaa 51007321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 33081090 - 33081157
Alignment:
Q  59 aattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaattaagta 126  Q
    ||||||||  |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  33081090 aattaatttgttctccctctcattttctctaaaacaaataatcaatgaaattaaatgcaaattaagta 33081157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 5085235 - 5085118
Alignment:
Q  123 agtactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaata 217  Q
    |||||||||| |||||||||||||||||||  |||| | |||||||||||     |||| ||| |||||||||||||||||| |||||||||  ||||||    
T  5085235 agtactccctccgtcccttaatgtaggcacccattgcctttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaata 5085136  T
Q  218 ttaccatattgtcctttg 235  Q
    |||| | |||||| ||||    
T  5085135 ttacgaaattgtcttttg 5085118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 32047403 - 32047516
Alignment:
Q  127 ctcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattac 221  Q
    |||||| |||||||||||||||||||  ||||   |||||||||||     |||| ||| ||||||||||||||||||||||||||||  ||||||||||    
T  32047403 ctccctccgtcccttaatgtaggcacccattgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattac 32047502  T
Q  222 catattgtcctttg 235  Q
     | |||||| ||||    
T  32047503 gaaattgtcatttg 32047516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 44335310 - 44335363
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  44335310 tcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttg 44335363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 25154416 - 25154331
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaa----tgaaattaaatgcaaattaagta 126  Q
    ||||||||||| ||||||||||   | | ||||||||||||| | ||||||||||||||    |||||||||||||||||||||||    
T  25154416 tgaaattaaatgcaaattaatttgctttccctctcattttcttcttaacaaataatcaagcaatgaaattaaatgcaaattaagta 25154331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 33231798 - 33231914
Alignment:
Q  124 gtactcccttcgtcccttaatgtaggcacatattgtccttttcacatttg-----aaatgttttcagtgtaattaatgtgtttgttttgtgcattaatat 218  Q
    ||||||||| ||||||||||||||| ||   |||| | |||||||||||      ||| ||| |||||||||||||||||| |||||||||  |||||||    
T  33231798 gtactccctccgtcccttaatgtagccatccattgcctttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatat 33231897  T
Q  219 taccatattgtcctttg 235  Q
    ||| | |||||||||||    
T  33231898 tacgaaattgtcctttg 33231914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 29140798 - 29140683
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||| ||||||||| ||  ||||| | |||||||||||     |||| |||  | ||||||||||||||| ||||||||| |||||||||    
T  29140798 tactccctccgtcctttaatgtagtcatctattgcctttttcacatttcttaagaaaagttgccggtgtaattaatgtgtctgttttgtgtattaatatt 29140699  T
Q  220 accatattgtcctttg 235  Q
    || | |||||||||||    
T  29140698 acaaaattgtcctttg 29140683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 16582489 - 16582602
Alignment:
Q  122 aagtactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaat 216  Q
    |||||||||||  || ||||||||||| ||   |||||| |||||||||||     |||| ||| |||||||||||||||||| |||||||||  |||||    
T  16582489 aagtactccctctgttccttaatgtagccatccattgtctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 16582588  T
Q  217 attaccatattgtc 230  Q
    ||||| | ||||||    
T  16582589 attacgaaattgtc 16582602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 48721950 - 48721897
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| |||||||||  |||||||||| | |||||||||||    
T  48721950 tcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctttg 48721897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 9684796 - 9684748
Alignment:
Q  186 tgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||| |||||||||| |||||||||| | ||||||||||    
T  9684796 tgtaattaatgtgtctgttttgtgcgttaatattacaaaattgtccttt 9684748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 30336018 - 30336138
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||||||| ||||| |||||||| |||  ||||   |||||||||||     |||| ||| || ||||||||||||||| | |||||||  ||||||||    
T  30336018 tactcccttggtcccataatgtagacactcattgcttttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctattttgtgtgttaatatt 30336117  T
Q  220 accatattgtcctttgcttct 240  Q
    |||| ||||||||||| ||||    
T  30336118 accaaattgtcctttgtttct 30336138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 46495330 - 46495382
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||||||| |||||||||  ||||||||| || ||||||||||    
T  46495330 tcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtccttt 46495382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 46591125 - 46591181
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttgcttct 240  Q
    ||||||||||||||||||||||||||  ||||||||| |  ||||||||||| ||||    
T  46591125 agtgtaattaatgtgtttgttttgtgtgttaatattatcgaattgtcctttgtttct 46591181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 44652941 - 44652890
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||| |||||||||  |||||||||||| ||||| |||||    
T  44652941 agtgtaattaatgtgtctgttttgtgttttaatattaccacattgttctttg 44652890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 47643554 - 47643614
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  |||||||||| | |||||||||||    
T  47643554 gaaaagttgtcagtgtaattaatgtgtatgttttgtg--ttaatattactaaattgtcctttg 47643614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 44163253 - 44163291
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatatta 220  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  44163253 tcagtgtaattaatgtgtttgttttgtgtgttaatatta 44163291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 5322167 - 5322078
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtg 209  Q
    |||||||| ||||||||||||||||||  ||||| | |||||| ||||     |||| ||| ||| |||||||||||||| |||||||||    
T  5322167 tactccctccgtcccttaatgtaggcatctattgcctttttcatattttttaagaaaagttatcaatgtaattaatgtgtctgttttgtg 5322078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 8877793 - 8877846
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||| ||||||||||||||||||||||  |||||||||| | |||||| ||||    
T  8877793 tcagtataattaatgtgtttgttttgtgtgttaatattacgaaattgtcatttg 8877846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 30898645 - 30898592
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| |||||| ||  |||||||||||| ||| |||||||    
T  30898645 tcagtgtaattaatgtgtctgttttatgtgttaatattaccaaattatcctttg 30898592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 44395524 - 44395609
Alignment:
Q  155 attgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||||||     |||||||| |||||||||||||| ||||| |||| ||  |||||||||| | ||| |||||||    
T  44395524 attgtccttttcacatttcttaagaaatgttgtcagtgtaattaatatgtttattttatgtgttaatattacaaaattatcctttg 44395609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27531111 - 27531159
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattac 221  Q
    |||| ||| ||||| ||||||||||||||||||||||  ||||||||||    
T  27531111 gaaaagttgtcagtataattaatgtgtttgttttgtgtgttaatattac 27531159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 16070391 - 16070494
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||||||     |||||| | |||||||||||||||||| |||||||||  ||||||||    
T  16070391 tactccctccgtcccttaatgtaggcacctattgtctttttcacatttcttaagaaatgctgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 16070490  T
Q  220 acca 223  Q
    ||||    
T  16070491 acca 16070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 46729266 - 46729377
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatta 220  Q
    |||| ||||||||||||||||||| ||   |||||| |||||||||||    |||| ||| |||||||||||||||||| |||||||||  |||||||||    
T  46729266 tacttccttcgtcccttaatgtagacattcattgtctttttcacatttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatta 46729365  T
Q  221 ccatattgtcct 232  Q
    | | ||||||||    
T  46729366 cgaaattgtcct 46729377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 52225973 - 52226094
Alignment:
Q  119 attaagtactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcatt 213  Q
    |||| ||||||||| ||||| |||||||||| || ||||||| |||||||||||     |||||||| ||||| |||||||||||| |||||| |   ||    
T  52225973 attatgtactccctccgtcctttaatgtaggtacctattgtctttttcacattttttaagaaatgttgtcagtataattaatgtgtctgttttatatgtt 52226072  T
Q  214 aatattaccatattgtcctttg 235  Q
    ||||||| || |||||||||||    
T  52226073 aatattatcaaattgtcctttg 52226094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 39237738 - 39237619
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcac--at--attgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaa 215  Q
    |||||||| |||||||||||||||||||  ||  |||||| |||||||||||     |||| ||| |||||||||||||||| | |||||||||  ||||    
T  39237738 tactccctccgtcccttaatgtaggcacgcatccattgtctttttcacattttttaagaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaa 39237639  T
Q  216 tattaccatattgtcctttg 235  Q
    |||||| | |||||||||||    
T  39237638 tattacgaaattgtcctttg 39237619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 5932899 - 5932961
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||||||||||||||||||||||||||||  ||||||||| || |||||| ||||    
T  5932899 gaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattatcaaattgtcatttg 5932961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 50782791 - 50782853
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  |||||||||| | |||||||||||    
T  50782791 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtcttaatattacgaaattgtcctttg 50782853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 20262542 - 20262438
Alignment:
Q  122 aagtactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaat 216  Q
    |||||||||||  |||||||||| ||| |||  |||| | |||||||||||     |||| ||| |||||||||||||||||| |||||||||  |||||    
T  20262542 aagtactccctctgtcccttaatatagacactcattgcctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 20262443  T
Q  217 attac 221  Q
    |||||    
T  20262442 attac 20262438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 5448622 - 5448737
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||| || ||||||||||||||||||   |||| | |||||||||||     |||||||| ||| | |||||||||||| |||||||||  ||||||||    
T  5448622 tactcgctccgtcccttaatgtaggcatccattgcctttttcacatttcttaagaaatgttatcaatataattaatgtgtctgttttgtgtgttaatatt 5448721  T
Q  220 accatattgtcctttg 235  Q
    || | ||| |||||||    
T  5448722 acgaaattatcctttg 5448737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 17799253 - 17799214
Alignment:
Q  69 ttcttcctctcattttctccataacaaataatcaatgaaa 108  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  17799253 ttctccctctcattttctccataacaaataaccaatgaaa 17799214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 43800832 - 43800883
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||| |||| |||||||||  |||||||||||| |||||||||||    
T  43800832 agtgtaattaaggtgtctgttttgtgtgttaatattaccaaattgtcctttg 43800883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 18683609 - 18683563
Alignment:
Q  189 aattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  18683609 aattaatgtgtttattttgtgcgttaatattaccaacttgtcctttg 18683563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 22750922 - 22750872
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||| | ||||||||| ||||||||||||| |||||| ||||    
T  22750922 gtgtaattaatgtatctgttttgtgtattaatattaccaaattgtcatttg 22750872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 45628155 - 45628105
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    ||||||||| |||||| ||||||||| ||||||||||||| |||| |||||    
T  45628155 agtgtaattgatgtgtctgttttgtgtattaatattaccaaattgcccttt 45628105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 5167997 - 5168054
Alignment:
Q  178 gttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||| ||||||||||| ||| |||||||||| |||||||||| | |||||| ||||    
T  5167997 gttttcggtgtaattaatatgtctgttttgtgcgttaatattactaaattgtcatttg 5168054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 30153314 - 30153253
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||| ||| |||||||||||||||||| |||||||||   ||||||||||| ||| ||||||    
T  30153314 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtgataatattaccaaattatccttt 30153253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 13096623 - 13096567
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttgcttct 240  Q
    |||||||||||||||| ||| |||||  |||||||||||| |||||| |||| ||||    
T  13096623 agtgtaattaatgtgtctgtgttgtgtgttaatattaccaaattgtcatttgtttct 13096567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 8065217 - 8065102
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||||| |  |||| |||||||||||||     |||||||| |||||||||||||||||| |||||||||  ||||||||    
T  8065217 tactccctccgtcccttaatgtaggctcccattgcccttttcacatttcctaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 8065118  T
Q  220 accatattgtcctttg 235  Q
    |||| ||| |||||||    
T  8065117 accaaattatcctttg 8065102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 13534379 - 13534463
Alignment:
Q  129 cccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtg 209  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||     |||||||| ||||||||||||||||||||||||||||    
T  13534379 ccctccgtcccttaatgtaggcacctattg-ccttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtttgttttgtg 13534463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 28265043 - 28264981
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  28265043 gaaaagttgtcagtgtaattaatgtgtttgttttgtgcgttaatattaccaaattgtcatttg 28264981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 41665671 - 41665785
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||| || |||||||||||||||||||  |||||  |||||||||||     |||||||| |||||||||||||||||| |||||||||  |||||| |    
T  41665671 tactctctccgtcccttaatgtaggcactcattgtt-ttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatagt 41665769  T
Q  220 accatattgtcctttg 235  Q
    | || |||||||||||    
T  41665770 atcaaattgtcctttg 41665785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 28733785 - 28733898
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||||||||||||||||||||||||||  ||| || |||||||||||     ||||  || || ||||||||||||||| |||||| ||  ||||||||    
T  28733785 tactcccttcgtcccttaatgtaggcacccattttctttttcacattttttaagaaaaattgtcggtgtaattaatgtgtctgttttatg--ttaatatt 28733882  T
Q  220 accatattgtcctttg 235  Q
    |||| |||||| ||||    
T  28733883 accaaattgtcatttg 28733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 9718317 - 9718214
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||| ||   ||||   |||||||||||     |||||||| |||||||||||||||||| |||||||||  ||||||||    
T  9718317 tactccctccgtcccttaatgtagccatccattgcatttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 9718218  T
Q  220 acca 223  Q
    ||||    
T  9718217 acca 9718214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 14420701 - 14420752
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  14420701 agtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttg 14420752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 7255626 - 7255676
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  7255626 gtgtaattaatgtgtctgttttgtgtattaatattaccaaattatcctttg 7255676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 35178938 - 35178828
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||||| |||||||||||||||||  |||||  |||||||||||     |||| ||| |||||||| ||||||||| |||||||||   |||||||    
T  35178938 tactcccttcatcccttaatgtaggcacccattgtttttttcacatttcttaagaaaagttgtcagtgtagttaatgtgtatgttttgtgtgataatatt 35178839  T
Q  220 accatattgtc 230  Q
    || | ||||||    
T  35178838 acgaaattgtc 35178828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27749525 - 27749573
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattac 221  Q
    |||| ||| |||||||||||||| ||| ||||||||| |||||||||||    
T  27749525 gaaaagttgtcagtgtaattaatatgtctgttttgtgtattaatattac 27749573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 21761771 - 21761849
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaattaa 123  Q
    ||||||||||| ||| ||||||  |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  21761771 tgaaattaaatgcaagttaatttgttcttcatctcattttttccatatcaaataatcaatgaaattaaatgcaaattaa 21761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 21020918 - 21020833
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataat----caatgaaattaaatgcaaattaagta 126  Q
    ||||||||||| ||||||||||  |||| |||  ||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  21020918 tgaaattaaatgcaaattaatttgttctccctaacattttctccataacaaataatcaatcaatgaaattaaatgcaaattaagta 21020833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 35128355 - 35128459
Alignment:
Q  134 cgtcccttaatgtaggcacatattgtccttttcacattt---gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtc 230  Q
    |||||||||||||| |||| ||||||| |||||||||||   |||| ||| |||||||||||||| ||| |||||||||  |||||||||  | ||||||    
T  35128355 cgtcccttaatgtaagcacctattgtctttttcacattttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtgttaatattatgaaattgtc 35128454  T
Q  231 ctttg 235  Q
    |||||    
T  35128455 ctttg 35128459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 48767521 - 48767639
Alignment:
Q  122 aagtactcccttcgtcccttaatgtaggcacatattgtccttttcacatttg-----aaatgttttcagtgtaattaatgtgtttgttttgtgcattaat 216  Q
    ||||||||||| |||||||||||||||||||  ||||   |||||||||||      ||| ||| |||||||||||||||||| |||||||||  |||||    
T  48767521 aagtactccctacgtcccttaatgtaggcacccattgcttttttcacatttcttaaaaaacgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 48767620  T
Q  217 attaccatattgtcctttg 235  Q
    ||||| | |||||||||||    
T  48767621 attacgaaattgtcctttg 48767639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 36726254 - 36726203
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  36726254 agtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtcctttg 36726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 33181309 - 33181370
Alignment:
Q  174 aaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||    
T  33181309 aaatgttgtcagtgtagttaatgtgtttgttttgtatattaatattaccaaattgtcatttg 33181370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 36116281 - 36116396
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||| || ||||||||||||||||||   |||||| |||||||||||     |||||||| || ||||||||||||||| |||||| ||  ||||||||    
T  36116281 tactctctccgtcccttaatgtaggcattcattgtctttttcacatttcttaagaaatgttgtcggtgtaattaatgtgtctgttttatgtgttaatatt 36116380  T
Q  220 accatattgtcctttg 235  Q
    || | |||||| ||||    
T  36116381 acgaaattgtcatttg 36116396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 20123463 - 20123525
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  ||||||||| || |||||||||||    
T  20123463 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttg 20123525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 37673707 - 37673797
Alignment:
Q  135 gtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatta 220  Q
    |||||||||||||| |||  |||||| |||||||||||     |||||||| | |||||||||||||||| |||||||||  |||||||||    
T  37673707 gtcccttaatgtagacacccattgtctttttcacatttcttaagaaatgttgtgagtgtaattaatgtgtctgttttgtgtgttaatatta 37673797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 4089645 - 4089544
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| | ||||||||||||||||   |||| | |||||||||||     |||| ||| |||||||||||||||||| |||||||||  ||||||||    
T  4089645 tactccctccttcccttaatgtaggcatccattgactttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 4089546  T
Q  220 ac 221  Q
    ||    
T  4089545 ac 4089544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 1324668 - 1324783
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||||||  |||||||||||||  |||  |||| | |||||||||||     |||||||| |||||||||||||||||| |||||||||  ||||| ||    
T  1324668 tactccctctgtcccttaatgtatccactcattgcctttttcacatttcttaagaaatgttatcagtgtaattaatgtgtctgttttgtgtgttaatctt 1324767  T
Q  220 accatattgtcctttg 235  Q
    | || |||||| ||||    
T  1324768 atcaaattgtcatttg 1324783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 29723421 - 29723468
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt 172  Q
    |||||||| |||||||||||||||||||  |||||| |||||||||||    
T  29723421 tactccctccgtcccttaatgtaggcacccattgtctttttcacattt 29723468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 10685098 - 10685160
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||| ||  |||||||||| | |||||||||||    
T  10685098 gaaaagttatcagtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttg 10685160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 21388267 - 21388317
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||| |||||||||  |||||||||| | |||||||||||    
T  21388267 gtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttg 21388317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 37048048 - 37048110
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  ||||| || ||| |||||||||||    
T  37048048 gaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatgttcccaaattgtcctttg 37048110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 48610228 - 48610166
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||| |||||||||||||| ||||||||| ||||||||||| | |||||| ||||    
T  48610228 gaaaagttgtcactgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcttttg 48610166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 2276660 - 2276607
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||| ||||| ||| |||||||||  |||||||||||| |||||||||||    
T  2276660 tcagtgtagttaatttgtctgttttgtgtgttaatattaccaaattgtcctttg 2276607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 25750390 - 25750443
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| |||||||||  |||||||||| | |||||| ||||    
T  25750390 tcagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattgtcatttg 25750443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 49100693 - 49100746
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| |||||| ||  |||||||||| | |||||||||||    
T  49100693 tcagtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttg 49100746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 21575024 - 21574909
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| |||||||||||||||||||  |||||| |||||||||||     |||||||||| |||||| ||||||||| | ||||||   ||||||||    
T  21575024 tactccctccgtcccttaatgtaggcacccattgtctttttcacatttcttaagaaatgtttttagtgtacttaatgtgtctattttgtatgttaatatt 21574925  T
Q  220 accatattgtcctttg 235  Q
    |||| |||||||||||    
T  21574924 accaaattgtcctttg 21574909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 25017818 - 25017703
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||| |||  |||||| ||||||| |||     |||||||| ||||| |||||||||||| |||||||||  ||||||||    
T  25017818 tactccctccgtcccttaatgtagacactcattgtctttttcacgtttcttaagaaatgttgtcagtataattaatgtgtctgttttgtgtgttaatatt 25017719  T
Q  220 accatattgtcctttg 235  Q
    |||| |||||| ||||    
T  25017718 accaaattgtcatttg 25017703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 10933966 - 10934069
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||| ||||||||||||||  ||||| | |||||||||||     |||||||| |||||||||||||||||| ||||||||   ||||||||    
T  10933966 tactccctccgttccttaatgtaggcatttattgcctttttcacattttttcagaaatgttgtcagtgtaattaatgtgtctgttttgtatgttaatatt 10934065  T
Q  220 acca 223  Q
    ||||    
T  10934066 acca 10934069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 36177252 - 36177367
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| | ||||||||||||||||  ||||||| |||| ||||||     |||| ||| |||||||||||||||||| | |||||||  ||||||||    
T  36177252 tactccctccatcccttaatgtaggcatctattgtcttttttacatttcttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaatatt 36177351  T
Q  220 accatattgtcctttg 235  Q
    || | |||||| ||||    
T  36177352 acaaaattgtcatttg 36177367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 5845193 - 5845251
Alignment:
Q  177 tgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| |||||||||||||||| ||||||||||| |||||||||| || |||||| ||||    
T  5845193 tgttgtcagtgtaattaatgtatttgttttgtgtattaatattatcaaattgtcatttg 5845251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 12895288 - 12895238
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  12895288 gtgtaattaatgtgtctgttttgtgtattaatattaccaaattgtcttttg 12895238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 15898554 - 15898492
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  ||||||||| || |||||||||||    
T  15898554 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttg 15898492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 129632 - 129684
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||||||| | ||||||| ||||||||||||| ||||| ||||    
T  129632 tcagtgtaattaatgtgtctattttgtgtattaatattaccaaattgttcttt 129684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 10523365 - 10523309
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgt 229  Q
    |||| ||| |||||||||||||||||| |||||||||  |||||||||||| |||||    
T  10523365 gaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgt 10523309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 4738590 - 4738705
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| | |||||||||| | |||   |||||| |||||||||||     ||||| || |||||||||||||||| |||||||||||  ||||||||    
T  4738590 tactccctccatcccttaatgcatgcatccattgtctttttcacatttcttaagaaatattgtcagtgtaattaatgtatttgttttgtgtgttaatatt 4738689  T
Q  220 accatattgtcctttg 235  Q
    || | |||| ||||||    
T  4738690 actaaattgacctttg 4738705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 34877626 - 34877729
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||| ||||||||| ||   |||| | |||||||||||     |||||||| |||||||||||||| ||| |||||||||  ||||||||    
T  34877626 tactccctccgtcctttaatgtagacattcattgcctttttcacatttcttaagaaatgttgtcagtgtaattaatttgtctgttttgtgtgttaatatt 34877725  T
Q  220 acca 223  Q
    ||||    
T  34877726 acca 34877729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 15967191 - 15967153
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattacca 223  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  15967191 gtgtaattaatgtgtctgttttgtgtattaatattacca 15967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 27587851 - 27587913
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||||| |||||||||||| |||||||||  |||||||||| | |||||||||||    
T  27587851 gaaaagttgtcagtataattaatgtgtctgttttgtgtgttaatattactaaattgtcctttg 27587913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 27798116 - 27798216
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| |||||||||||| |||||   |||||  |||||||||||     ||||| || |||||||||||||| ||| |||||||||  ||||||||    
T  27798116 tactccctccgtcccttaatgcaggcatccattgtatttttcacattttttaagaaatattgtcagtgtaattaatttgtctgttttgtgtgttaatatt 27798215  T
Q  220 a 220  Q
    |    
T  27798216 a 27798216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 33862897 - 33862845
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||||||| ||||||||  | ||||||||| | ||||||||||    
T  33862897 tcagtgtaattaatgtgtctgttttgtatactaatattactaaattgtccttt 33862845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 35569096 - 35569048
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattac 221  Q
    |||| ||| |||||||||||||||||| |||||| || |||||||||||    
T  35569096 gaaaagttatcagtgtaattaatgtgtctgttttatgtattaatattac 35569048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 30476000 - 30476115
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| |||||||||||||||||||  |||| | |||||||||||     |||| ||| |||||||||||||||||| |||||||||  ||||||||    
T  30476000 tactccctccgtcccttaatgtaggcacccattgcctttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 30476099  T
Q  220 accatattgtcctttg 235  Q
    || | |||||||||||    
T  30476100 acgaaattgtcctttg 30476115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 48343962 - 48343885
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataatcaatgaaattaaatgcaaatta 122  Q
    |||||||||||  |||||||||  || ||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  48343962 tgaaattaaatttaaattaatttgttattcctctcattttctccgtaacacatagtcaatgaaattaaatgcaaatta 48343885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 26121344 - 26121406
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||||||||||||||||||||||||||||  ||||||||| || |||||||||||    
T  26121344 gaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattatcaaattgtcctttg 26121406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 46048534 - 46048596
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| ||||||||| ||||||||||| | |||||||||||    
T  46048534 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttg 46048596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 46435824 - 46435762
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  46435824 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttg 46435762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 40645644 - 40645748
Alignment:
Q  136 tcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtc 230  Q
    ||||||||||||||||   |||| | |||||||||||     |||||||| || ||||||||||||||| |||||||||  |||||||||||| ||||||    
T  40645644 tcccttaatgtaggcatccattgcctttttcacatttcttaagaaatgttgtctgtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtc 40645743  T
Q  231 ctttg 235  Q
     ||||    
T  40645744 ttttg 40645748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 50092690 - 50092741
Alignment:
Q  183 cagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||||||| |||||||| ||||||||||| | ||||||||||    
T  50092690 cagtgtaattaatgtgttggttttgtgtattaatattacaaaattgtccttt 50092741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 26517309 - 26517248
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||| ||| |||||||||||||||||| |||||| ||  |||||||||||| ||||||||||    
T  26517309 gaaaagttgtcagtgtaattaatgtgtctgttttctgtgttaatattaccaaattgtccttt 26517248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 41308869 - 41308820
Alignment:
Q  174 aaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattacca 223  Q
    ||||||| |||||||||||||||||| |||||||||  ||||||||||||    
T  41308869 aaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacca 41308820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 43187174 - 43187125
Alignment:
Q  186 tgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||    
T  43187174 tgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttg 43187125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 48343417 - 48343500
Alignment:
Q  45 tgaaattaaatacaaattaattgtttcttcctctcattttctccataacaaataat----caatgaaattaaatgcaaattaagta 126  Q
    ||||||||||| ||||||||||  |||| ||||  ||||||||||||| |||||||    |||| |||||||||||||||||||||    
T  48343417 tgaaattaaatgcaaattaatttgttctccctc--attttctccataataaataattcatcaataaaattaaatgcaaattaagta 48343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 35765740 - 35765680
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctt 233  Q
    |||| ||| |||||||||||||| ||| ||||||||| ||||||||||||| |||| ||||    
T  35765740 gaaaagttatcagtgtaattaatatgtctgttttgtgtattaatattaccaaattgacctt 35765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 41727323 - 41727271
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtccttt 234  Q
    |||||||||||||||||| |||||||||  |||||||||| | ||||||||||    
T  41727323 tcagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattgtccttt 41727271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 3084262 - 3084227
Alignment:
Q  72 ttcctctcattttctccataacaaataatcaatgaa 107  Q
    |||||||||||||||||||||||||||| |||||||    
T  3084262 ttcctctcattttctccataacaaataaccaatgaa 3084227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 39617344 - 39617282
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| ||||||||   |||||||||| | |||||||||||    
T  39617344 gaaaagttgtcagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttg 39617282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 26043040 - 26043093
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||| ||| |||||||||  ||||| |||||| |||||||||||    
T  26043040 tcagtgtaattaatatgtctgttttgtgtgttaatgttaccaaattgtcctttg 26043093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 50363048 - 50363101
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||| ||| |||||| || ||||||||||||| |||||| ||||    
T  50363048 tcagtgtaattaatatgtctgttttatgtattaatattaccaaattgtcatttg 50363101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 45868588 - 45868552
Alignment:
Q  72 ttcctctcattttctccataacaaataatcaatgaaa 108  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  45868588 ttcctctcattttctccgtaacaaataaccaatgaaa 45868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 25198302 - 25198364
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| ||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  25198302 gaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtcctttg 25198364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 4274054 - 4273955
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||||||||| ||||||||| ||| ||||||| |||||||||||     ||||| || | ||||||||||||||||||||||| ||  ||||||||    
T  4274054 tactcccttcgtccattaatgtagacacgtattgtctttttcacatttcttaagaaatattgttagtgtaattaatgtgtttgttttatgtgttaatatt 4273955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 37956082 - 37956196
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| |||||||||||||||| ||  |||||| |||||||||||     |||| ||| |||||||||||||||||| |||||||||  ||||||||    
T  37956082 tactccctccgtcccttaatgtaggtacc-attgtctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 37956180  T
Q  220 accatattgtcctttg 235  Q
    || |  ||||||||||    
T  37956181 acgaatttgtcctttg 37956196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 40337337 - 40337222
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||||||   |||||| |||||||||||     |||| ||| ||||| |||||||||||| ||||||||   ||||||||    
T  40337337 tactccctccgtcccttaatgtaggcatccattgtctttttcacatttcttatgaaaagttatcagtataattaatgtgtatgttttgtatgttaatatt 40337238  T
Q  220 accatattgtcctttg 235  Q
    || | |||||||||||    
T  40337237 acaaaattgtcctttg 40337222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 39543809 - 39543709
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||| | ||||| ||||||||||||| ||||| | |||||| ||||     |||||||| || ||||||||||||||| |||||||||| ||||||||    
T  39543809 tactccatccgtcctttaatgtaggcacctattgcctttttcatatttcttaagaaatgttgtccgtgtaattaatgtgtctgttttgtgcgttaatatt 39543710  T
Q  220 a 220  Q
    |    
T  39543709 a 39543709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 25184990 - 25185105
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||| |||||||||||||||| ||||  |||| | |||||||||||     |||| ||| ||||||||| |||||||| |||||||||  ||||||||    
T  25184990 tactccattcgtcccttaatgtatgcacccattgcctttttcacatttcttaagaaaagttgtcagtgtaactaatgtgtctgttttgtgtgttaatatt 25185089  T
Q  220 accatattgtcctttg 235  Q
    || | |||||| ||||    
T  25185090 acgaaattgtcatttg 25185105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 38770333 - 38770218
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||| |||||||||||||||  |||||| |||||| ||||     || | ||| |||||||||||||||||||| |||||||  ||||||||    
T  38770333 tactccctccgttccttaatgtaggcacgcattgtctttttcatatttcttaagataagttgtcagtgtaattaatgtgtttattttgtgtgttaatatt 38770234  T
Q  220 accatattgtcctttg 235  Q
    || | |||||| ||||    
T  38770233 acgaaattgtcatttg 38770218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 57330 - 57220
Alignment:
Q  129 cccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattacca 223  Q
    |||| ||||||||||| ||||||| ||||||  |||||||||||     |||| ||| || ||||||||||||||| |||||||||  |||||||||| |    
T  57330 ccctccgtcccttaatataggcacttattgtttttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaatattacga 57231  T
Q  224 tattgtccttt 234  Q
     ||||| ||||    
T  57230 aattgttcttt 57220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 7772472 - 7772586
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||| |||||||||||| |||| ||  ||||||| |||| ||||||     |||| ||| ||| |||||||||||||| |||||||||  ||||||||    
T  7772472 tactccattcgtcccttaacgtagccatctattgtcttttttacattttttaagaaaagttgtcattgtaattaatgtgtctgttttgtgtgttaatatt 7772571  T
Q  220 accatattgtccttt 234  Q
    || | ||||||||||    
T  7772572 acgaaattgtccttt 7772586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 14847002 - 14846952
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||| ||||    
T  14847002 gtgtaattaatgtgtctgctttgtgcgttaatattaccatattgtcttttg 14846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 24512313 - 24512198
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||| ||| ||||||||||||||||||   ||| || |||||||||||     ||||  || |||||||||||||||||| |||||||||  ||||||||    
T  24512313 tacttcctccgtcccttaatgtaggcatccattatctttttcacattttttaagaaaatttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 24512214  T
Q  220 accatattgtcctttg 235  Q
    | || |||||| ||||    
T  24512213 atcaaattgtcttttg 24512198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 2562814 - 2562761
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||||||| ||||||||   |||||||||| | |||||||||||    
T  2562814 tcagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttg 2562761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 14522686 - 14522641
Alignment:
Q  184 agtgtaattaatgtgtttgttttgtgcattaatattaccatattgt 229  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||    
T  14522686 agtgtaattaatgtgtatgttttgtgtgttaatattaccaaattgt 14522641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 26878808 - 26878759
Alignment:
Q  186 tgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||||||||||||| | |||||||  |||||||||||| |||||||||||    
T  26878808 tgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttg 26878759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 5895691 - 5895805
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    |||||||| ||||||||||||||||||   |||||| |||||||||||     |||| ||| | | |||||||||||||| ||||||||| |||||||||    
T  5895691 tactccctccgtcccttaatgtaggcatccattgtctttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctgttttgtgtattaatatt 5895790  T
Q  220 accatattgtccttt 234  Q
    || | ||||||||||    
T  5895791 acgaaattgtccttt 5895805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 1763826 - 1763888
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    |||| ||| |||||||||||||||||| |||||||||  |||||||||| | |||||||||||    
T  1763826 gaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttg 1763888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 4250804 - 4250690
Alignment:
Q  125 tactcccttcgtcccttaatgtaggcacatattgtccttttcacattt-----gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatatt 219  Q
    ||||||||  ||||||||||||||| |  ||||||| |||| ||||||     ||||  || |||||||||||||||||| |||||||||  ||||||||    
T  4250804 tactccctctgtcccttaatgtaggtatttattgtcttttttacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 4250705  T
Q  220 accatattgtccttt 234  Q
    || |  |||||||||    
T  4250704 acgaagttgtccttt 4250690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 15981819 - 15981864
Alignment:
Q  185 gtgtaattaatgtgtttgttttgtgcattaatattaccatattgtc 230  Q
    ||||||||||||||| |||||||||  |||||||||||| ||||||    
T  15981819 gtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtc 15981864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 16350543 - 16350596
Alignment:
Q  182 tcagtgtaattaatgtgtttgttttgtgcattaatattaccatattgtcctttg 235  Q
    ||||||||||||||| || |||||||||  |||||||||||| |||||| ||||    
T  16350543 tcagtgtaattaatgagtctgttttgtgtgttaatattaccaaattgtcatttg 16350596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 9461306 - 9461354
Alignment:
Q  173 gaaatgttttcagtgtaattaatgtgtttgttttgtgcattaatattac 221  Q
    |||||||| || |||||||||||||||||||||| ||  ||||||||||    
T  9461306 gaaatgttgtcggtgtaattaatgtgtttgttttatgtgttaatattac 9461354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University