View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_low_13 (Length: 233)
Name: NF3839_low_13
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 44879610 - 44879801
Alignment:
| Q |
15 |
aaagggatgaatgatgaacgagataaaaatattaaaagaaccaaattaatggaaaagaaaacatatcataaggttcattaaaacgaagnnnnnnntaaat |
114 |
Q |
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| T |
44879610 |
aaagggatgaatgatgaacgagataaaaatattaaaagaaccaaattaatggaaaagaaaacatatcataaggttcattaaaacgaagaaaaaaat-aat |
44879708 |
T |
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| Q |
115 |
tgaatgagagtaacaatagatgaaccaatctgcacgatagttatgttgattttcc-tttgctcaaaaccctccaatgaaagtagtttatttca |
206 |
Q |
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| T |
44879709 |
tgaatgagagtaacaatagatgaaccaatctgcacgatagttatgttgattttccttttgctcaaaaccctccaatgaaagtagtttatttca |
44879801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 44878720 - 44878642
Alignment:
| Q |
18 |
gggatgaatgatgaacgagataaaaatattaaaagaaccaaattaatggaaaagaaaacatatcataaggttcattaaa |
96 |
Q |
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||||||||||||| | ||||| ||| |||||||| |||| ||||| | |||||||||||||| |||||||||||||| |
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| T |
44878720 |
gggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaa |
44878642 |
T |
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