View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3839_low_15 (Length: 215)

Name: NF3839_low_15
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3839_low_15
NF3839_low_15
[»] chr4 (4 HSPs)
chr4 (17-201)||(54396712-54396896)
chr4 (30-104)||(35132750-35132824)
chr4 (35-104)||(23587525-23587594)
chr4 (35-104)||(23596377-23596446)
[»] chr7 (16 HSPs)
chr7 (34-104)||(7877525-7877595)
chr7 (35-104)||(8102974-8103043)
chr7 (30-110)||(10494160-10494240)
chr7 (30-101)||(17260543-17260614)
chr7 (37-104)||(39985955-39986022)
chr7 (34-104)||(8602280-8602350)
chr7 (34-95)||(8382677-8382738)
chr7 (35-104)||(8590945-8591014)
chr7 (35-107)||(8017202-8017274)
chr7 (30-110)||(13333242-13333322)
chr7 (58-101)||(6789842-6789885)
chr7 (30-104)||(3147574-3147648)
chr7 (34-104)||(8636135-8636205)
chr7 (61-107)||(8659696-8659742)
chr7 (61-110)||(1301797-1301846)
chr7 (61-101)||(8585501-8585541)
[»] chr2 (4 HSPs)
chr2 (35-111)||(12234996-12235072)
chr2 (37-104)||(12245198-12245265)
chr2 (58-107)||(7542556-7542605)
chr2 (34-104)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (34-107)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 54396712 - 54396896
Alignment:
Q  17 cattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396712 cattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgacc 54396811  T
Q  117 aagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396812 aagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttg 54396896  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  30 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 23587594 - 23587525
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587594 caccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 23596446 - 23596377
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596446 caccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 8102974 - 8103043
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    ||||||||||||| || |||||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102974 caccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 10494240 - 10494160
Alignment:
Q  30 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 110  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  30 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 101  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 39985955 - 39986022
Alignment:
Q  37 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985955 ccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 8602280 - 8602350
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||||||| || ||||  || ||||||||||| |||||||| || ||||||||||| ||||||||    
T  8602280 gcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattctt 8602350  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 95  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 8590945 - 8591014
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    ||||||||||||| |||||||  |  ||||||||||| |||||||| || ||||||||||| ||||||||    
T  8590945 caccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattctt 8591014  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 8017274 - 8017202
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 107  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcac 8017202  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 13333322 - 13333242
Alignment:
Q  30 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 110  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  58 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 101  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  30 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  61 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 107  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  61 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 110  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  61 tgagaatcattgaaataagcaggaacagtaacaacagcatt 101  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 12234996 - 12235072
Alignment:
Q  35 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 111  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  37 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  58 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 107  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 104  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 4678420 - 4678347
Alignment:
Q  34 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 107  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

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