View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_low_2 (Length: 397)
Name: NF3839_low_2
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 9086918 - 9086548
Alignment:
| Q |
9 |
agcaaagggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttttaaacgcaaaagaatacagaaaactatctatattccaagc |
108 |
Q |
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| T |
9086918 |
agcaaaaggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttttaaccgcaaaagaatacggaaaactatctatattccaaac |
9086819 |
T |
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| Q |
109 |
tctcttatttttgctagtaccggtaagatgagacgaaattaagaaactaatttttgtttcttaatgttctgtttatctctttttgttgggaagaaaattc |
208 |
Q |
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| T |
9086818 |
tctcttatttttgctagtaccggtaagatgagacgaaactaagaaactactttttgtttcttaatgttctgtttatctgtttttgttgggaagaaaattc |
9086719 |
T |
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| Q |
209 |
taacttttaatatgatattgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaa |
308 |
Q |
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| T |
9086718 |
taacttttaatatgatattgcagggtcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaagaagatcaa |
9086619 |
T |
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| Q |
309 |
gttagaattgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
379 |
Q |
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| T |
9086618 |
gttagaattgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
9086548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 379
Target Start/End: Complemental strand, 9125872 - 9125717
Alignment:
| Q |
224 |
tattgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataag |
323 |
Q |
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| T |
9125872 |
tattgcaggttcaattttattggggttgctcaccattgcatttataaagatttatctacatttcagagaaaaagaagaagatcaagttagagttgatagg |
9125773 |
T |
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| Q |
324 |
tttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
379 |
Q |
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| T |
9125772 |
tttttagaggattatagagcacaaaagcctgccagattttcatattctgatataaa |
9125717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 9070401 - 9070249
Alignment:
| Q |
227 |
tgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttt |
326 |
Q |
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| T |
9070401 |
tgcaggttcaattatattgggaatgggcaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttt |
9070302 |
T |
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| Q |
327 |
ttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
379 |
Q |
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| T |
9070301 |
ttagaggattatagagcccaaaagcctgccagattttcatactctgatataaa |
9070249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 379
Target Start/End: Complemental strand, 8979689 - 8979539
Alignment:
| Q |
229 |
caggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttttt |
328 |
Q |
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| T |
8979689 |
caggttcaattgttttggggttggttaccattatatttattaagatctatttatattttagaaaaaaagaagaagatcaagttagagttgacaagttttt |
8979590 |
T |
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| Q |
329 |
agatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
379 |
Q |
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| T |
8979589 |
agaggattatagagcacaacaacctactagattttcttttgctgatataaa |
8979539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 8862215 - 8862139
Alignment:
| Q |
303 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
379 |
Q |
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| T |
8862215 |
gatcaaattagagttgataagtttttagaggattatcgagcacaaaaacctactagattttcttatgccgatataaa |
8862139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 9126057 - 9126005
Alignment:
| Q |
16 |
ggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttt |
68 |
Q |
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| T |
9126057 |
ggcatgaaatgtagatggaataacaacggcaccaaatgtgacattgaatgttt |
9126005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 8866090 - 8866030
Alignment:
| Q |
303 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagatttt |
363 |
Q |
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|||||| ||||| |||||||||||||||| |||| | |||| ||||| ||| ||||||||| |
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| T |
8866090 |
gatcaaattagagttgataagtttttagaggattatcgagctcaaaaacctactagatttt |
8866030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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