View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_low_3 (Length: 396)
Name: NF3839_low_3
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 119 - 382
Target Start/End: Complemental strand, 7978721 - 7978458
Alignment:
| Q |
119 |
aacatttgttagttatagatggcttctgacttaaaatttaagcacttaatggtggatgtttatttacaaataagtttttagacgcttatgtttagatggg |
218 |
Q |
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| T |
7978721 |
aacatttgttaattatagatggcttctgacttaaaatttaagcacttaatggtggatgtttatttacaaataagtttttagacgcttatgtttagatggg |
7978622 |
T |
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| Q |
219 |
ctctctatgaaagaatattctttggatcaatacatgaatgaatgtactgttaatcatatgaaacattacaacaaaataatcacagtgaaaggaagcttgn |
318 |
Q |
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| T |
7978621 |
ctctctatgaaagaatattctttggatcaatacatgaatgaatgtactgttaatcatatgaaacattacaacaaaataatcacagtgaaaggaagcttga |
7978522 |
T |
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| Q |
319 |
nnnnnnctagttattatgatcatctttgttgatagtattgtttttggccctcattctcctaccc |
382 |
Q |
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| T |
7978521 |
aaaaaactagttattatgatcatctttgttgatagtattgtttttggccctcattctcctaccc |
7978458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7978793 - 7978731
Alignment:
| Q |
1 |
tgtgccagttctagaaaaaattgtgatattagtatgtgatcacgttagtgtcttaatgcttaa |
63 |
Q |
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| T |
7978793 |
tgtgccagttctagaaaaaattgtgatattagtatgcgatcacgttagtgtcttaatgcttaa |
7978731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 1515898 - 1515976
Alignment:
| Q |
225 |
atgaaagaatattctttggatcaatacatgaatgaatgtactgttaatcatatgaaacattac---aacaaaataatca |
300 |
Q |
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| T |
1515898 |
atgaaagaataatttttggatcaatacatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatca |
1515976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 1530132 - 1530206
Alignment:
| Q |
229 |
aagaatattctttggatcaatacatgaatgaatgtactgttaatcatatgaaacattac---aacaaaataatca |
300 |
Q |
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| T |
1530132 |
aagaataatttttggatcaatacatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatca |
1530206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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