View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3839_low_6 (Length: 265)

Name: NF3839_low_6
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3839_low_6
NF3839_low_6
[»] chr7 (3 HSPs)
chr7 (1-142)||(37025611-37025752)
chr7 (221-265)||(37025488-37025532)
chr7 (87-132)||(37024858-37024903)
[»] chr5 (3 HSPs)
chr5 (88-132)||(32433633-32433677)
chr5 (91-135)||(29668361-29668405)
chr5 (88-134)||(33861574-33861618)
[»] chr3 (3 HSPs)
chr3 (91-131)||(54513983-54514023)
chr3 (88-124)||(23045323-23045359)
chr3 (87-141)||(28048741-28048795)
[»] chr2 (3 HSPs)
chr2 (87-141)||(18059005-18059059)
chr2 (89-142)||(13350398-13350451)
chr2 (88-141)||(39822737-39822790)
[»] chr4 (1 HSPs)
chr4 (81-132)||(8424818-8424869)
[»] chr6 (2 HSPs)
chr6 (89-135)||(31821898-31821944)
chr6 (88-141)||(32703150-32703203)
[»] chr8 (1 HSPs)
chr8 (88-132)||(29525708-29525752)
[»] chr1 (1 HSPs)
chr1 (88-132)||(21948084-21948128)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 37025752 - 37025611
Alignment:
Q  1 taatagtcttttatcattattttattcagtaaatagttaaatattctactgcacatatatgtattatccttgcccctattaaaaatagagaaattcttag 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37025752 taatagtcttttatcattattttattcagtatatagttaaatattctactgcacatatatgtattatccttgcccctattaaaaatagagaaattcttag 37025653  T
Q  101 gtgaactctctcccaacacatcattcttacactcatccaatc 142  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  37025652 gtgaactctcacccaacacatcattcttacactcatccaatc 37025611  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 37025532 - 37025488
Alignment:
Q  221 ttttctccttcttattaatctctctcgtgttacttcatcctccac 265  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  37025532 ttttctctttcttattaatctctctcgtgttacttcatcctccac 37025488  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 37024858 - 37024903
Alignment:
Q  87 agagaaattcttaggtgaactctctcccaacacatcattcttacac 132  Q
    |||||||||| || |||||||||| || ||||||||||||||||||    
T  37024858 agagaaattcgtaagtgaactctcacctaacacatcattcttacac 37024903  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 32433633 - 32433677
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacac 132  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  32433633 gagaaattcttaggtgaactctaacccaacacatcattcttacac 32433677  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 29668361 - 29668405
Alignment:
Q  91 aaattcttaggtgaactctctcccaacacatcattcttacactca 135  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  29668361 aaattcttacgtgaactcttacccaacacatcattcttacactca 29668405  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 33861574 - 33861618
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacactc 134  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||    
T  33861574 gagaaattctt--gtgaactctcacccaacacatcattcttacactc 33861618  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 54513983 - 54514023
Alignment:
Q  91 aaattcttaggtgaactctctcccaacacatcattcttaca 131  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  54513983 aaattcttaggtgaactctcacccaacacatcattcttaca 54514023  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 23045359 - 23045323
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcat 124  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23045359 gagaaattcttaggtgaactctcacccaacacatcat 23045323  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 28048741 - 28048795
Alignment:
Q  87 agagaaattcttaggtgaactctctcccaacacatcattcttacactcatccaat 141  Q
    ||||||||| |||||||||||||| |||||||  |||| ||||||| ||||||||    
T  28048741 agagaaattattaggtgaactctcacccaacatgtcatccttacacccatccaat 28048795  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 18059059 - 18059005
Alignment:
Q  87 agagaaattcttaggtgaactctctcccaacacatcattcttacactcatccaat 141  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||| || |||||    
T  18059059 agagaaattcttacgtgaactcttacccaacacatcattcttacacccaaccaat 18059005  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 13350451 - 13350398
Alignment:
Q  89 agaaattcttaggtgaactctctcccaacacatcattcttacactcatccaatc 142  Q
    ||||||||||||||||||  || || ||||| |||||||||||| |||||||||    
T  13350451 agaaattcttaggtgaaccttcgcctaacacgtcattcttacacacatccaatc 13350398  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 39822737 - 39822790
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacactcatccaat 141  Q
    |||||||||||| |||||||||  || |||||||||||||||||| || |||||    
T  39822737 gagaaattcttacgtgaactcttaccaaacacatcattcttacacccaaccaat 39822790  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 8424869 - 8424818
Alignment:
Q  81 aaaaatagagaaattcttaggtgaactctctcccaacacatcattcttacac 132  Q
    |||| ||||||||||||||||| ||||||| || |||| |||||||||||||    
T  8424869 aaaattagagaaattcttaggtaaactctcacctaacatatcattcttacac 8424818  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 31821898 - 31821944
Alignment:
Q  89 agaaattcttaggtgaactctctcccaacacatcattcttacactca 135  Q
    ||||||||||| |||||||||| || ||||| |||||||||||||||    
T  31821898 agaaattcttacgtgaactctcacctaacacgtcattcttacactca 31821944  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 32703150 - 32703203
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacactcatccaat 141  Q
    |||||||| |||||||||||||| || ||||| ||||||||||| ||| |||||    
T  32703150 gagaaatttttaggtgaactctcacctaacacgtcattcttacattcaaccaat 32703203  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 29525708 - 29525752
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacac 132  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||    
T  29525708 gagaaattcttatgtgaactcttacccaacacaacattcttacac 29525752  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21948084 - 21948128
Alignment:
Q  88 gagaaattcttaggtgaactctctcccaacacatcattcttacac 132  Q
    |||||||||||||||||||| || || ||||| ||||||||||||    
T  21948084 gagaaattcttaggtgaactttcacctaacacgtcattcttacac 21948128  T

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