View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_low_7 (Length: 251)
Name: NF3839_low_7
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 38768430 - 38768190
Alignment:
| Q |
12 |
agcaaaggagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacatgctaatatttgtcattnnnnnnnnnnn-tcacattagaacgtg |
110 |
Q |
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| T |
38768430 |
agcaaaagagttaaaggtcaagggtttgaatcctcgtacgggagaaaatactaacatgctaatatttgtcattaaaaaaaataaatcacattagaacgtg |
38768331 |
T |
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| Q |
111 |
gcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcagg |
210 |
Q |
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| T |
38768330 |
gcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcagg |
38768231 |
T |
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| Q |
211 |
atttttatggtaaccagtgaaaacacttttgcctctgacac |
251 |
Q |
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| T |
38768230 |
attcttatggtaaccagtgaaaacacttttgcctctgacac |
38768190 |
T |
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 44995964 - 44996041
Alignment:
| Q |
157 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggatttttatggtaaccagtgaaaac |
234 |
Q |
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| T |
44995964 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaac |
44996041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 47774140 - 47774091
Alignment:
| Q |
19 |
gagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacat |
68 |
Q |
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| T |
47774140 |
gagttaaaggtccagggtttgaatcctggcaagggagaaaatactaacat |
47774091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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