View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3839_low_9 (Length: 249)
Name: NF3839_low_9
Description: NF3839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3839_low_9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 24852029 - 24852272
Alignment:
| Q |
6 |
gagagatgaaagtgtgtctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacacattca |
105 |
Q |
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| T |
24852029 |
gagagatgaaagtgtatctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacacattca |
24852128 |
T |
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| Q |
106 |
aaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtaagtgtgttggctaagatcaaagaagcaggactactattagtagaacca |
205 |
Q |
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| T |
24852129 |
aaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtgagtgtgttggctaagatcaaagaagcagtactactattagtagagcca |
24852228 |
T |
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| Q |
206 |
gtaggaaactaaagcttgaaaggcttgaacttgtataggcaatc |
249 |
Q |
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| T |
24852229 |
gtaggaaactaaagcttgaaaggcttgaacttgtataggcaatc |
24852272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 24839604 - 24839711
Alignment:
| Q |
28 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacac----attcaaaatggattttacagctt |
123 |
Q |
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| T |
24839604 |
tttatctgatttccctatacagcaagatgtgcaacattctaagttttgcttacttggcaaaggaattttacacacaaattcaaaatggattttactgttt |
24839703 |
T |
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| Q |
124 |
gaggatga |
131 |
Q |
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| T |
24839704 |
gaggatga |
24839711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 24848067 - 24848140
Alignment:
| Q |
28 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacaca |
101 |
Q |
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| T |
24848067 |
tttatatgattttcctatacaacaagaagagaaacattccaagctttggttacttggcaaacaaattttacaca |
24848140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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