View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3840_high_1 (Length: 541)
Name: NF3840_high_1
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3840_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 6002821 - 6002343
Alignment:
| Q |
18 |
gaacgagatggctatgcttttaataaggatatacaatatgaaagactcacnnnnnnnn-cctgtgtcaatgctattggttactcaagggatacttgttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6002821 |
gaacgagatggctatgcttttaataaggatatacaatatgaaagactcactttttttttcctgtgtca-tgctattggttactcaagggatacttgttgt |
6002723 |
T |
|
| Q |
117 |
gcacgaaagaatacaaagacattgaggaaagaaaatatgaaaaacaaaagagctttgctatatacagcggagccaagttcacgaataacccacgaaagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6002722 |
gcacgaaagaatacaaagacattgaggaaagaaaatatgaaaaacaaaagagctttgctatatacagcggagccaagttcacgaataacccacgaaagta |
6002623 |
T |
|
| Q |
217 |
ccagcaccgctagatctgcattttggaacaattcatgggttgtgggcaaaatacatgggtgtgtgaataataatttggcttgcatgcagtacgcctcgtg |
316 |
Q |
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| T |
6002622 |
ctagcaccgctatatctgcattttggcacaattcatgggttgtgggcaaaatacatgggtgtgtgaataataatttggcttgcatgcagtacgcctcgtg |
6002523 |
T |
|
| Q |
317 |
gtgttgtcgcgagaaaatttctcgctatgaatagctttttccaaaacaaaactctatttttgtccccagaaaatttgcacaatagaaaggaaaaaatatt |
416 |
Q |
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| T |
6002522 |
gtgttgtcgcgagaaaacttctcgctgtaaatagctttttccaaaacaaaactctatttttgtccctagaaaatttgcacaattgaaaggaaaaaatatt |
6002423 |
T |
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| Q |
417 |
ggagatgcatgcgctaccaaggatccgattatggagaaacacc----------aaatggcatgtaaaaacttgtatacga |
486 |
Q |
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| T |
6002422 |
ggagatgcatgcgctaccaaggatccgattatggagaaagaccatttggtgaaaaatggcatgtaaaaacttgtatacga |
6002343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 206 - 358
Target Start/End: Complemental strand, 32188401 - 32188249
Alignment:
| Q |
206 |
ccacgaaagtaccagcaccgctagatctgcattttggaacaattcatgggttgtgggcaaaatacatgggtgtgtgaataataatttggcttgcatgcag |
305 |
Q |
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|||| ||||||| ||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32188401 |
ccacaaaagtactagcaccgttagatctgcattttggcacaattcatgggtggtaggcaaaatacatgggtgtgtgaataataatttggcttgcatgcag |
32188302 |
T |
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| Q |
306 |
tacgcctcgtggtgttgtcgcgagaaaatttctcgctatgaatagctttttcc |
358 |
Q |
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| T |
32188301 |
tatgcgtcgtggtgttgtcgcgagaaaacttctcgctgtaaatagttttttcc |
32188249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 165 - 358
Target Start/End: Original strand, 27645675 - 27645868
Alignment:
| Q |
165 |
agagctttgctatatacagcggagccaagttcacgaataacccacgaaagtaccagcaccgctagatctgcattttggaacaattcatgggttgtgggca |
264 |
Q |
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||||||||||||||| |||| |||||| ||||| ||||||||||||||| || || |||| |||||||| |||||| ||||| |||| || || ||| |
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| T |
27645675 |
agagctttgctatatgtagcgaagccaaattcacaaataacccacgaaagcactagaaccgtaagatctgcgttttggcacaatgcatgagtggttggct |
27645774 |
T |
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| Q |
265 |
aaatacatgggtgtgtgaataataatttggcttgcatgcagtacgcctcgtggtgttgtcgcgagaaaatttctcgctatgaatagctttttcc |
358 |
Q |
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| T |
27645775 |
aaatacatgggggtgtgaataataactaggcttgaatacagtacacgtcatggtgttgtcgcgagaaaacttttcgctatacatagctttttcc |
27645868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 44833621 - 44833533
Alignment:
| Q |
195 |
tcacgaataacccacgaaagtaccagcaccgctagatctgcattttggaacaattcatgggttgtgggcaaaatacatgggtgtgtgaat |
284 |
Q |
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| T |
44833621 |
tcacgaataacccacgaaagcactagcaccta-agatctgcgttttggcacaatgcatgagtggttggcaaaatacatgagtgcgtgaat |
44833533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 31034371 - 31034300
Alignment:
| Q |
85 |
atgctattggttactcaagggatacttgttgtgcacgaaagaatacaaagacattgaggaaagaaaatatga |
156 |
Q |
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| T |
31034371 |
atgctattgatcactcaagggataactgtcgtgcacaaaagaatacaaaggcaccaaggaaagaaaatatga |
31034300 |
T |
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