View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3840_high_3 (Length: 425)
Name: NF3840_high_3
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3840_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Complemental strand, 33223447 - 33223051
Alignment:
| Q |
11 |
accgagactgagaatgatgatgaagaaagaaacgatcttcaattgcatatgcaaattggaggatctattgttaacaatcaaggtgtgattaatggcaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223447 |
accgagactgagaatgatgatgaagaaagaaacgatcttcaattgcatatgcaaattggaggatctattgttaacaatcaaggtgtgattaatggcaata |
33223348 |
T |
|
| Q |
111 |
ataatggtaatgtgtttaccaagtccttaaatatctttcggtttggctcaacgaaggagaggggaggttttttaatggaatggatggaaaggaagttaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223347 |
ataatggtaatgtgtttaccaagtccttaaatatctttcggtttggctcaacgaaggagaggggaggttttttaatggaatggatggaaaggaagttaag |
33223248 |
T |
|
| Q |
211 |
gagacaggaaggaggggatggattttaacaaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223247 |
gagacaggaaggaggggatggattttaacaaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttg |
33223148 |
T |
|
| Q |
311 |
gtttttagtttgtggttctttannnnnnnnnatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaatt |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223147 |
gtttttagtttgtggttctttatttttttttatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaatt |
33223051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 110 - 300
Target Start/End: Complemental strand, 33226323 - 33226128
Alignment:
| Q |
110 |
aataatggtaatgtgtttaccaagtccttaaatatctttcggtttggctcaacgaaggagagggg-aggttttttaatggaat----ggatggaaaggaa |
204 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||| || |
|
|
| T |
33226323 |
aataattgcaatgtgtttgccaagtatttaaatatctttcggtttgggtcaacgaaggagagggggaggtattttaatggaattaatggatggaaaaaaa |
33226224 |
T |
|
| Q |
205 |
-gttaaggagacaggaaggaggggatggattttaacaaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaa |
300 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33226223 |
agttaagaa-acaggaaggaggggattgattttaacaaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgatatcaaataaa |
33226128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University