View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3840_high_5 (Length: 278)

Name: NF3840_high_5
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3840_high_5
NF3840_high_5
[»] chr5 (11 HSPs)
chr5 (1-262)||(39473238-39473499)
chr5 (80-262)||(39476720-39476902)
chr5 (81-262)||(39463341-39463522)
chr5 (83-262)||(39487673-39487852)
chr5 (83-262)||(39457081-39457260)
chr5 (83-262)||(39484473-39484652)
chr5 (83-262)||(39455836-39456015)
chr5 (75-262)||(39461461-39461648)
chr5 (80-262)||(39452208-39452390)
chr5 (80-239)||(43311313-43311472)
chr5 (150-262)||(39452831-39452943)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39473499 - 39473238
Alignment:
Q  1 aactgcagcctactacaattaagtctgcccttatnnnnnnnnnnnnnnnnggcttgctcacataacaacatccttttacttcatacctgattcataatat 100  Q
    ||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473499 aactgcagcctactacaattaagtctgcccttataaaaaatggtaaaaaaggcttgctcacataacaacatccttttacttcatacctgattcataatat 39473400  T
Q  101 aatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctcc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473399 aatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctcc 39473300  T
Q  201 atccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473299 atccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 39473238  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 39476902 - 39476720
Alignment:
Q  80 ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt 179  Q
    ||||||||| || |||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39476902 ttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatctcttt 39476803  T
Q  180 cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  39476802 cactttcttccttacatctgcatccttatccaacacactccttattcctcgctcaattttatcggcagttacaagatagttag 39476720  T

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Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 39463341 - 39463522
Alignment:
Q  81 tcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttc 180  Q
    |||||||| ||  ||||||||||||| ||||||||||||||| | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  39463341 tcatacctcatcaataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttc 39463440  T
Q  181 actttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39463441 actttcttccttacttctccatccttatctaacacactccttattcctctctcaatcttatcagcagttacaagatagttag 39463522  T

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Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39487852 - 39487673
Alignment:
Q  83 atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac 182  Q
    |||||||||||||||||||||||| |||| |||||||||| | ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  39487852 atacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactcatctctatcac 39487753  T
Q  183 tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    ||| ||||| |  ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  39487752 ttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagttacaagatagttag 39487673  T

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Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 39457081 - 39457260
Alignment:
Q  83 atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac 182  Q
    ||||||||| | |||||||||| | ||||||||||||||| | ||| |||||||| || ||||||| |||||||||||||  | ||||||||||||||||    
T  39457081 atacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactcatctctttcac 39457180  T
Q  183 tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||    
T  39457181 tttcttccttacctctccatccttatccaacacactctttattcctctctcaatcttgtcggcagttaaaagatagttag 39457260  T

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Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39484652 - 39484473
Alignment:
Q  83 atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac 182  Q
    |||||||||||||||||||||||| || | |||||||||| | ||| ||||||||||| ||||||||||||||| |||| || |||||||| | ||||||    
T  39484652 atacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcatttttttcac 39484553  T
Q  183 tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    ||||||| | || ||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  39484552 tttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttag 39484473  T

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Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39456015 - 39455836
Alignment:
Q  83 atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac 182  Q
    ||||||| ||||||||||||||||  |||||||||||||| | | |||||||||| || ||||||||||||||||| || ||||||||||||||||||||    
T  39456015 atacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcac 39455916  T
Q  183 tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    | | ||||| |  ||||||||||||||||| |||||||||||||||||||||||||| || | ||||| |||||||||||    
T  39455915 tgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttag 39455836  T

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Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 39461648 - 39461461
Alignment:
Q  75 tttacttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatc 174  Q
    |||| ||||||  ||||||| |||| |||| |  |||||||||||||    ||||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  39461648 tttagttcatatttgattcacaataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatc 39461549  T
Q  175 tctttcactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    |||||||||||||| || || ||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  39461548 tctttcactttctttctgacctctccatccttttccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttag 39461461  T

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Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 39452390 - 39452208
Alignment:
Q  80 ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt 179  Q
    |||||||||| ||||||||||||||||  ||||||| ||||||   | | |||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  39452390 ttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactcttttcactcatctcttt 39452291  T
Q  180 cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag 262  Q
    || ||| ||||| |  ||||||||||||||||||||||||||||||||| |||||||||| || ||||| | |||||||||||    
T  39452290 catttttttcctgaactctccatccttatccaacacactccttattcctttctcaatcttgtcagcagtcaaaagatagttag 39452208  T

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Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 43311313 - 43311472
Alignment:
Q  80 ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt 179  Q
    ||||||| ||||||||||||||||||| ||||| ||||||  | | ||| ||||||||||| |||||||| |||||| |||  | |||||||||||||||    
T  43311313 ttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctcttt 43311412  T
Q  180 cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatctt 239  Q
    ||||||||||||||| ||||||||  | ||||||||||||||||||||| |||| |||||    
T  43311413 cactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatctt 43311472  T

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Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 39452831 - 39452943
Alignment:
Q  150 agtcttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagtt 249  Q
    ||||||||||| | ||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||| || || ||||||    
T  39452831 agtcttcttacatgtttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagtt 39452930  T
Q  250 acaagatagttag 262  Q
    | |||| ||||||    
T  39452931 aaaagagagttag 39452943  T

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