View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3840_high_6 (Length: 262)
Name: NF3840_high_6
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3840_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 39473635 - 39473884
Alignment:
| Q |
5 |
tttgtcttatgctaaatgatctattttctttagtgtttactatttgaaaattacttttaagtttactttttagatatct--gtcaaatacannnnnnnnn |
102 |
Q |
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| T |
39473635 |
tttgtctgatgctaaatgatctattttctttagtgtttactattttaaaattacttttaagtttactttttagatatctttgtcaaatacattttttttt |
39473734 |
T |
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| Q |
103 |
gtatagcagtttccaaatgattctatcgatttcattctcatccataggaataaaaaattattgaaaagttaaaaatatgtcaacaaagaagttctgcact |
202 |
Q |
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| T |
39473735 |
gtatagcagtttccaaatgattctatcgatttcattctcatccataggaataaaaaattattgaaaagttaaaaatatgtcaacaaagaagttctgcact |
39473834 |
T |
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| Q |
203 |
gcattgaaaaaatatacattactactattactattctcttcaactctctg |
252 |
Q |
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| T |
39473835 |
gcattgaaaaaatatacattactactattactactctcttcaactctctg |
39473884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 39465635 - 39465669
Alignment:
| Q |
26 |
tattttctttagtgtttactatttgaaaattactt |
60 |
Q |
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| T |
39465635 |
tattttctttagtgtttactaattgaaaattactt |
39465669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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