View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3840_low_2 (Length: 484)

Name: NF3840_low_2
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3840_low_2
NF3840_low_2
[»] chr5 (7 HSPs)
chr5 (1-449)||(42194474-42194922)
chr5 (297-390)||(42439619-42439712)
chr5 (291-390)||(3970402-3970501)
chr5 (306-397)||(38592212-38592302)
chr5 (287-353)||(9449253-9449319)
chr5 (335-397)||(10372926-10372988)
chr5 (308-386)||(12432959-12433037)
[»] chr4 (6 HSPs)
chr4 (291-397)||(11271533-11271638)
chr4 (298-397)||(25319039-25319138)
chr4 (291-394)||(33560568-33560671)
chr4 (291-390)||(22683848-22683947)
chr4 (305-390)||(10185192-10185277)
chr4 (306-342)||(54705440-54705476)
[»] chr3 (6 HSPs)
chr3 (306-390)||(49634041-49634125)
chr3 (298-380)||(7298329-7298410)
chr3 (347-390)||(341322-341365)
chr3 (355-390)||(37703147-37703182)
chr3 (287-362)||(48089418-48089493)
chr3 (321-374)||(21513364-21513417)
[»] chr1 (8 HSPs)
chr1 (291-388)||(18325393-18325490)
chr1 (306-387)||(32088580-32088659)
chr1 (318-390)||(11049261-11049333)
chr1 (296-388)||(12655234-12655326)
chr1 (297-380)||(39289275-39289358)
chr1 (287-393)||(48832872-48832976)
chr1 (360-397)||(20026159-20026196)
chr1 (320-388)||(1233318-1233386)
[»] chr2 (8 HSPs)
chr2 (306-390)||(9943405-9943489)
chr2 (299-390)||(33502850-33502941)
chr2 (306-390)||(44439253-44439337)
chr2 (336-388)||(13475904-13475956)
chr2 (302-342)||(44810370-44810410)
chr2 (306-380)||(37561706-37561780)
chr2 (291-380)||(36979132-36979221)
chr2 (297-390)||(42740968-42741060)
[»] chr8 (4 HSPs)
chr8 (307-397)||(11791728-11791818)
chr8 (318-390)||(26100148-26100220)
chr8 (306-387)||(1836217-1836298)
chr8 (355-395)||(4273347-4273387)
[»] chr7 (2 HSPs)
chr7 (318-389)||(18349786-18349857)
chr7 (291-380)||(40422777-40422866)
[»] chr6 (4 HSPs)
chr6 (291-397)||(2234210-2234314)
chr6 (308-380)||(10564936-10565008)
chr6 (355-397)||(9044341-9044383)
chr6 (329-390)||(8092001-8092062)
[»] scaffold0024 (1 HSPs)
scaffold0024 (317-390)||(23595-23668)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 42194922 - 42194474
Alignment:
Q  1 ttgtaactaactgtgcaagcagaatactggtactgcagagcgaaacaagaccatgttcctataactaactgtgctgactagatcactcaatcacggatag 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42194922 ttgtaactaactgtgcaagcagaatactggtactacagagcgaaacaaaaccatgttcctataactaactgtgctgactcgatcactcaatcacggatag 42194823  T
Q  101 cggattgataaaattccgctatgcaatattgttataacgccactatagcggccgctttggacacattttgtactaaatagtttgttcaaattctgctgcg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42194822 cggattgatataattccgctatgcaatattgttataacgccactatagccgccgctttgaacacattttgtactaaatagtttgttcaaattctgctgcg 42194723  T
Q  201 ctttagcctatgtttggaacaaccaaaatcgactattgaggtgtaaaattgattgattttaacatgcctagttgacctcgagaaccattaatttagcctc 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42194722 ctttagcctatgtttggaacaaccaaaatcgactcttgaggtgtaaaattgattgattttaacatgcctagttgacctcgagaaccattaatttagcctc 42194623  T
Q  301 cagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttttatgtaaatcac 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42194622 cagagttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttttatgtaaatcac 42194523  T
Q  401 tctacattcaactaaagtaaaatcaatgattttgacagtagtaaaacaa 449  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42194522 tctacattcaactaaagtaaaatcaatgattttggcagtagtaaaacaa 42194474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 42439712 - 42439619
Alignment:
Q  297 cctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||||| ||||||||||| |||||||||  | ||||||||||||||||||| ||| |||||||||| || ||||| |||||| |||||||||    
T  42439712 cctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactcactttta 42439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 3970501 - 3970402
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||| ||||||||| |||||||||| |||||||||||  ||||||||||||| || |||  || |||||||| | ||| ||| |||||||||||||||||    
T  3970501 attttgcctccagaattgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttttacatttaaaattactgttcaattcactttta 3970402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 38592212 - 38592302
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttttatgtaaat 397  Q
    ||||||||||  |||||| ||  ||||||||||||||||||||||||| |||||||||  ||| |||||||| || |||||||| |||||||    
T  38592212 ttgattctaatttgaagccagaatttgtagcttttgagtctaaatgtgatttttacac-caaagttattgttgaactcacttttttgtaaat 38592302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 9449319 - 9449253
Alignment:
Q  287 attaatttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtg 353  Q
    |||||||| ||||||| | ||||||| ||| | |||||| | |||||||||||| ||||||||||||    
T  9449319 attaatttcgcctccaaaattgattccaacttaaagctaagatttgtagcttttaagtctaaatgtg 9449253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 10372926 - 10372988
Alignment:
Q  335 gcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttttatgtaaat 397  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||||| | |||||  |||||||    
T  10372926 gcttttgagtctaaacgtgatttttataatgaaatttattgttcaacttactttcgtgtaaat 10372988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 12433037 - 12432959
Alignment:
Q  308 gattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcact 386  Q
    ||||||||| |||||||||| |||||| || |||| || ||| ||| ||| |||||  ||||||||||||||| |||||    
T  12433037 gattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaactcact 12432959  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 11271638 - 11271533
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||  ||  |||| |||| || |||||||||||| |||||||||    
T  11271638 attttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtctaaacatgacttttgcact-aagtttattgttcaactcactttta 11271540  T
Q  391 tgtaaat 397  Q
    |||||||    
T  11271539 tgtaaat 11271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 397
Target Start/End: Original strand, 25319039 - 25319138
Alignment:
Q  298 ctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggttttt-acactgaaatttattgttcaattcacttttatgtaaa 396  Q
    ||||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||| ||||| | ||||||||||||||||||| ||||||||| |||||    
T  25319039 ctccagaattgattctaacttgaaggtaggatttgtagcttt-gagtctaaatgtgattttttatactgaaatttattgttcaactcacttttacgtaaa 25319137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 33560671 - 33560568
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||| ||||| ||| ||||||||||||  |||||||| ||||||||||||||||||||| ||| |||||| ||||| ||| ||||||||| |||||| ||    
T  33560671 attttgcctctagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgatttttaaactgacattcattgttcaactcacttata 33560572  T
Q  391 tgta 394  Q
    ||||    
T  33560571 tgta 33560568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 390
Target Start/End: Original strand, 22683848 - 22683947
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||| ||||||||| || ||| |||| |||||||| | | ||||||||||||||||||| ||| |||||||| ||||||||||||||||| || ||||||    
T  22683848 attttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactcgctttta 22683947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 10185192 - 10185277
Alignment:
Q  305 gttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||||||||| ||||| |||   ||| ||||||||| ||||||  || | |||||||| |||||||||||| || |||||||||    
T  10185192 gttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcactttta 10185277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 54705476 - 54705440
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttga 342  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  54705476 ttgatactaacttgaagctagggtttgtagcttttga 54705440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 49634125 - 49634041
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    ||||||||||| |||||||||| |||||||||||||  |||||||||| || ||||||| || |||||| ||||| |||||||||    
T  49634125 ttgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgattattacactcaagtttattattcaactcactttta 49634041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 7298410 - 7298329
Alignment:
Q  298 ctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    ||||||| | ||||||||| |||||||||| ||||||| ||||||||||||  ||| |||||| |||||||||||||||||||    
T  7298410 ctccagaatcgattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattttta-actgaaatttattgttcaa 7298329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 341322 - 341365
Alignment:
Q  347 aaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||    
T  341322 aaatgtgatttttacactcaaatttatttttcaattcactttta 341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 37703147 - 37703182
Alignment:
Q  355 tttttacactgaaatttattgttcaattcactttta 390  Q
    |||||||||| |||||||||||||||||||||||||    
T  37703147 tttttacactcaaatttattgttcaattcactttta 37703182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 48089493 - 48089418
Alignment:
Q  287 attaatttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttaca 362  Q
    |||||||| ||||| ||| ||||||| ||||| |||||||| ||||| | ||||||||||||| ||  ||||||||    
T  48089493 attaattttgcctcaagaattgattcaaaccttaagctaggatttgtcgtttttgagtctaaacgtaatttttaca 48089418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 21513417 - 21513364
Alignment:
Q  321 agctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttatt 374  Q
    ||||||| |||||||||||||| || ||| ||| |||||||||| |||||||||    
T  21513417 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatt 21513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 18325490 - 18325393
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttt 388  Q
    |||| ||||||| |||| | |||||| |||||||||| ||||  ||||||||||||||||||| |||||||| | ||||||| ||||||  |||||||    
T  18325490 attttgcctccaaagttaactctaacttgaagctaggatttgatgcttttgagtctaaatgtgatttttacattaaaatttactgttcatctcacttt 18325393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 32088659 - 32088580
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactt 387  Q
    ||||||||||| |||||||||| |||  ||||||||| |  ||| ||| |||||||||||||||||||||||||| ||||||    
T  32088659 ttgattctaacttgaagctaggatttcgagcttttgatt--aaaagtgatttttacactgaaatttattgttcaactcactt 32088580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 11049261 - 11049333
Alignment:
Q  318 tgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||||||| |||||||||||||| ||||||  || |||||||||  |||||||| |||||| |||||||||    
T  11049261 tgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcactttta 11049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 12655234 - 12655326
Alignment:
Q  296 gcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttt 388  Q
    ||||| ||| || |||||||| |||||||||  |||||||| ||||||||||||| || | ||||| || || |||||||||||| |||||||    
T  12655234 gcctctagaattaattctaacttgaagctagaatttgtagcatttgagtctaaatatgatctttactctaaagtttattgttcaactcacttt 12655326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 39289358 - 39289275
Alignment:
Q  297 cctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    |||||| | ||||||||||| |||||||||   || ||||||||||||| ||| ||| |||||||||||||| |||| ||||||    
T  39289358 cctccaaaattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttcaa 39289275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 48832872 - 48832976
Alignment:
Q  287 attaatttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcact 386  Q
    |||||||| ||||| ||||||||||||| |    || |||| |||||||||||||| || ||||||| |||||||||| ||||||||| || || ||||     
T  48832872 attaattttgcctcaagagttgattctagctc--agttaggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactcacg 48832969  T
Q  387 tttatgt 393  Q
    |||||||    
T  48832970 tttatgt 48832976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 20026196 - 20026159
Alignment:
Q  360 acactgaaatttattgttcaattcacttttatgtaaat 397  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  20026196 acactcaaatttattgttcaattcacttttatgtaaat 20026159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 1233318 - 1233386
Alignment:
Q  320 aagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttt 388  Q
    |||||||| |||||||||||||  ||| ||  || |||||||||| |||||||||||| || |||||||    
T  1233318 aagctaggatttgtagcttttggctctgaacatgatttttacactcaaatttattgttgaactcacttt 1233386  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 9943405 - 9943489
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    ||||||||| | |||||||||| |||||||||||  ||| ||||  |||||||| |||||||||||||||||||| | |||||||    
T  9943405 ttgattctagcttgaagctaggatttgtagctttcaagtgtaaacatggttttttcactgaaatttattgttcaacttactttta 9943489  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 33502941 - 33502850
Alignment:
Q  299 tccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||| ||||||||||| |||||||||  |||  || ||||||||||| ||||| || ||||||| ||||||||||||||| ||| |||||    
T  33502941 tccagaattgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcattttta 33502850  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 44439253 - 44439337
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    ||||||||||| ||||||||   |||| ||||||||| ||||||  || |||| ||||| ||||||||||||||| |||||||||    
T  44439253 ttgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcactttta 44439337  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 13475904 - 13475956
Alignment:
Q  336 cttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttt 388  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||| |||||||    
T  13475904 cttttgaatctaaaagtgatttttacacttaaatttattgttcaaatcacttt 13475956  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 44810370 - 44810410
Alignment:
Q  302 agagttgattctaacctgaagctagggtttgtagcttttga 342  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  44810370 agagttgattctaacttgaagctaggatttgtagcttttga 44810410  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 37561706 - 37561780
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    ||||||||||| |||| ||| | |||||| ||||||| |  ||||||| |||||||||| |||| ||||||||||    
T  37561706 ttgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaatctattgttcaa 37561780  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 36979132 - 36979221
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    |||| |||| |||| ||||| ||||| |||||||||| | | |||| ||||||||||||  || |||| ||||| ||| |||||||||||    
T  36979132 attttgccttcagaattgatactaacttgaagctaggctctttagcgtttgagtctaaacatgattttcacacttaaaattattgttcaa 36979221  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 42740968 - 42741060
Alignment:
Q  297 cctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||| | ||||||||| | |||||||| | |||||||||||||| |||| |  || |||||||||| ||||||| ||| ||| |||||||||    
T  42740968 cctccataattgattcta-cttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcactttta 42741060  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 397
Target Start/End: Complemental strand, 11791818 - 11791728
Alignment:
Q  307 tgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcacttttatgtaaat 397  Q
    |||||||| | | |||||||| |||||||||||||||||| || ||| |||||||||| ||||||| ||||||  | ||||||| ||||||    
T  11791818 tgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttcagcttacttttacgtaaat 11791728  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 26100220 - 26100148
Alignment:
Q  318 tgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||||||| |||||||||||||| |||| |  || |||||||||  |||||||| |||||| |||||||||    
T  26100220 tgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttta 26100148  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 1836298 - 1836217
Alignment:
Q  306 ttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactt 387  Q
    ||||||||||| |||||||||| | ||||||||||||    ||| ||| | |||||||| || |||||||||||||| ||||    
T  1836298 ttgattctaacttgaagctaggatgtgtagcttttgaaagcaaaagtgatatttacactcaagtttattgttcaatttactt 1836217  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 4273387 - 4273347
Alignment:
Q  355 tttttacactgaaatttattgttcaattcacttttatgtaa 395  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  4273387 tttttacaatgaaatctattgttcaattaacttttatgtaa 4273347  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 18349786 - 18349857
Alignment:
Q  318 tgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttt 389  Q
    ||||| ||||||||||||||||||| |  ||| ||| |||||||||| ||||||||||||||| ||| ||||    
T  18349786 tgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactcaatttt 18349857  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 40422777 - 40422866
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    |||| ||||| ||| ||||||||||| ||||| |||| ||||| |||||||||| || |||   ||||||||| |||| |||||||||||    
T  40422777 attttgcctcaagaattgattctaacttgaagttaggatttgtggcttttgagtgtatatgatatttttacaccgaaaattattgttcaa 40422866  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 2234314 - 2234210
Alignment:
Q  291 atttagcctccagagttgattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||| |||||| || ||||||||||| ||||| || | ||||| ||||  ||||||||| ||| |||| ||  |||| ||||||||||||||||||||||    
T  2234314 attttgcctcctgaattgattctaacatgaagttaagatttgtggctt--gagtctaaacgtgattttcactatgaagtttattgttcaattcactttta 2234217  T
Q  391 tgtaaat 397  Q
     ||||||    
T  2234216 cgtaaat 2234210  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 10565008 - 10564936
Alignment:
Q  308 gattctaacctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 380  Q
    ||||||||| ||||| |||| |||||||||||||| || ||||||| |||| || || || ||||||||||||    
T  10565008 gattctaacttgaagttaggatttgtagcttttgactcaaaatgtgattttaacgctaaagtttattgttcaa 10564936  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 9044383 - 9044341
Alignment:
Q  355 tttttacactgaaatttattgttcaattcacttttatgtaaat 397  Q
    |||||||||  |||||||||||| |||||||||||||||||||    
T  9044383 tttttacacgaaaatttattgtttaattcacttttatgtaaat 9044341  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 8092062 - 8092001
Alignment:
Q  329 tttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    |||||| |||||| ||||||| ||| |||||| ||| || |||||||||||| |||||||||    
T  8092062 tttgtaccttttgtgtctaaacgtgatttttatactaaagtttattgttcaactcactttta 8092001  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 23668 - 23595
Alignment:
Q  317 ctgaagctagggtttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaattcactttta 390  Q
    ||||||||||| |||||||||||||| |||| | ||| |||||| ||| ||||||||  ||||| |||||||||    
T  23668 ctgaagctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactcactttta 23595  T

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