View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3840_low_6 (Length: 405)

Name: NF3840_low_6
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3840_low_6
NF3840_low_6
[»] chr1 (5 HSPs)
chr1 (244-381)||(11814512-11814649)
chr1 (274-333)||(10494762-10494821)
chr1 (246-291)||(2077604-2077649)
chr1 (244-287)||(27786941-27786984)
chr1 (245-287)||(15495780-15495822)
[»] chr8 (3 HSPs)
chr8 (244-291)||(5515201-5515248)
chr8 (244-290)||(3763161-3763207)
chr8 (247-287)||(10181963-10182003)
[»] chr5 (4 HSPs)
chr5 (244-291)||(40600065-40600112)
chr5 (244-291)||(42268986-42269033)
chr5 (245-287)||(40680777-40680819)
chr5 (337-374)||(12156159-12156196)
[»] chr3 (2 HSPs)
chr3 (244-291)||(31699128-31699175)
chr3 (245-287)||(46743088-46743130)
[»] chr2 (3 HSPs)
chr2 (247-291)||(9910508-9910552)
chr2 (244-287)||(1533201-1533244)
chr2 (244-284)||(27888678-27888718)
[»] chr7 (2 HSPs)
chr7 (244-291)||(43047873-43047920)
chr7 (244-286)||(32979120-32979162)
[»] chr6 (1 HSPs)
chr6 (337-376)||(30845290-30845329)
[»] scaffold0974 (1 HSPs)
scaffold0974 (248-291)||(2592-2635)
[»] chr4 (2 HSPs)
chr4 (246-287)||(12130425-12130466)
chr4 (337-374)||(52635563-52635600)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 244 - 381
Target Start/End: Complemental strand, 11814649 - 11814512
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttagacgatgtagcttgtttcaagaattgagttatctgttcattgtcctttttgtg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11814649 gggttttcttctatgagtttgttgttaatagggttttcaaatacttagacgatgtagcttgtttcaagaattgagttacatgttcattgtcctttttgtg 11814550  T
Q  344 gggtggtatgtgttttctaggtagtgattttacccgtg 381  Q
    || || ||||||||||||||||||||||||||||||||    
T  11814549 ggttgctatgtgttttctaggtagtgattttacccgtg 11814512  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 10494821 - 10494762
Alignment:
Q  274 gggttttcaaatacttagacgatgtagcttgtttcaagaattgagttatctgttcattgt 333  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10494821 gggttttcaaatacttagacggtgtagcttgtttcaagaattgagttatctgttcattgt 10494762  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 2077604 - 2077649
Alignment:
Q  246 gttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  2077604 gttttcttctatgagtttgttgttaatggggttttcaaatacttag 2077649  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 27786941 - 27786984
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    |||||||||| ||||||||||||||| || ||||||||||||||    
T  27786941 gggttttcttttatgagtttgttgttgatggggttttcaaatac 27786984  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 15495822 - 15495780
Alignment:
Q  245 ggttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  15495822 ggttttcttctatgagtttgttgttgatgaggttttcaaatac 15495780  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 5515248 - 5515201
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5515248 gggttttcttctatgagtttgttgttaattgggttttcaaatacttag 5515201  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 3763161 - 3763207
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatactta 290  Q
    |||||||||||||||||||||||||||||   |||||||||||||||    
T  3763161 gggttttcttctatgagtttgttgttaatgaagttttcaaatactta 3763207  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 10182003 - 10181963
Alignment:
Q  247 ttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  10182003 ttttcttctatgagtttgttgttgatggggttttcaaatac 10181963  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 40600065 - 40600112
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40600065 gggttttcttctatgagtttgttgttaatggggttttcaaatacttag 40600112  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 42268986 - 42269033
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  42268986 gggttttcttctatgagtttgttgttaattgggttttcaaataattag 42269033  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 40680819 - 40680777
Alignment:
Q  245 ggttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  40680819 ggttttcttctatgagtttgttgttgataaggttttcaaatac 40680777  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 12156196 - 12156159
Alignment:
Q  337 ttttgtggggtggtatgtgttttctaggtagtgatttt 374  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  12156196 ttttgtggggttgtatgtgttttctaggtggtgatttt 12156159  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 31699175 - 31699128
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31699175 gggttttcttctatgagtttgttgttaatggggttttcaaatacttag 31699128  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 46743088 - 46743130
Alignment:
Q  245 ggttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  46743088 ggttttcttctatgagtttgttgttgatggggttttcaaatac 46743130  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 9910552 - 9910508
Alignment:
Q  247 ttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  9910552 ttttcttctatgagtttgttgttaatggggttttcaaatacttag 9910508  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 1533244 - 1533201
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  1533244 gggttttcttctatgagtttgttgttgatggggttttcaaatac 1533201  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 27888718 - 27888678
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaa 284  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  27888718 gggttttcctctatgagtttgttgttgatggggttttcaaa 27888678  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 43047873 - 43047920
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  43047873 gggttttcttctatgagtttgttgttaatggggttttctaatacttag 43047920  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 32979162 - 32979120
Alignment:
Q  244 gggttttcttctatgagtttgttgttaatagggttttcaaata 286  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  32979162 gggttttcttctatgagtttgttgttgatggagttttcaaata 32979120  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 30845329 - 30845290
Alignment:
Q  337 ttttgtggggtggtatgtgttttctaggtagtgattttac 376  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30845329 ttttgtggggtggtatgtgttttctaggtggtgattttac 30845290  T

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Target: scaffold0974 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 2592 - 2635
Alignment:
Q  248 tttcttctatgagtttgttgttaatagggttttcaaatacttag 291  Q
    |||||||||||||||||||||| || || |||||||||||||||    
T  2592 tttcttctatgagtttgttgttcattggattttcaaatacttag 2635  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 12130466 - 12130425
Alignment:
Q  246 gttttcttctatgagtttgttgttaatagggttttcaaatac 287  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  12130466 gttttcttctatgagtttgttgttgatgaggttttcaaatac 12130425  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 52635600 - 52635563
Alignment:
Q  337 ttttgtggggtggtatgtgttttctaggtagtgatttt 374  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  52635600 ttttgtggggttgtatgtgttttctaggtggtgatttt 52635563  T

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