View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3840_low_7 (Length: 278)
Name: NF3840_low_7
Description: NF3840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3840_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39473499 - 39473238
Alignment:
| Q |
1 |
aactgcagcctactacaattaagtctgcccttatnnnnnnnnnnnnnnnnggcttgctcacataacaacatccttttacttcatacctgattcataatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39473499 |
aactgcagcctactacaattaagtctgcccttataaaaaatggtaaaaaaggcttgctcacataacaacatccttttacttcatacctgattcataatat |
39473400 |
T |
|
| Q |
101 |
aatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctcc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39473399 |
aatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctcc |
39473300 |
T |
|
| Q |
201 |
atccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39473299 |
atccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
39473238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 39476902 - 39476720
Alignment:
| Q |
80 |
ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt |
179 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39476902 |
ttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatctcttt |
39476803 |
T |
|
| Q |
180 |
cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
39476802 |
cactttcttccttacatctgcatccttatccaacacactccttattcctcgctcaattttatcggcagttacaagatagttag |
39476720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 39463341 - 39463522
Alignment:
| Q |
81 |
tcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttc |
180 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||||||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
39463341 |
tcatacctcatcaataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttc |
39463440 |
T |
|
| Q |
181 |
actttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39463441 |
actttcttccttacttctccatccttatctaacacactccttattcctctctcaatcttatcagcagttacaagatagttag |
39463522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39487852 - 39487673
Alignment:
| Q |
83 |
atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| | ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
39487852 |
atacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactcatctctatcac |
39487753 |
T |
|
| Q |
183 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
||| ||||| | ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
39487752 |
ttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagttacaagatagttag |
39487673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 39457081 - 39457260
Alignment:
| Q |
83 |
atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
182 |
Q |
| |
|
||||||||| | |||||||||| | ||||||||||||||| | ||| |||||||| || ||||||| ||||||||||||| | |||||||||||||||| |
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|
| T |
39457081 |
atacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactcatctctttcac |
39457180 |
T |
|
| Q |
183 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
39457181 |
tttcttccttacctctccatccttatccaacacactctttattcctctctcaatcttgtcggcagttaaaagatagttag |
39457260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39484652 - 39484473
Alignment:
| Q |
83 |
atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
182 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||| | ||| ||||||||||| ||||||||||||||| |||| || |||||||| | |||||| |
|
|
| T |
39484652 |
atacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcatttttttcac |
39484553 |
T |
|
| Q |
183 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
||||||| | || ||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
39484552 |
tttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttag |
39484473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 39456015 - 39455836
Alignment:
| Q |
83 |
atacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
182 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| | | |||||||||| || ||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
39456015 |
atacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcac |
39455916 |
T |
|
| Q |
183 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
| | ||||| | ||||||||||||||||| |||||||||||||||||||||||||| || | ||||| ||||||||||| |
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|
| T |
39455915 |
tgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttag |
39455836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 39461648 - 39461461
Alignment:
| Q |
75 |
tttacttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatc |
174 |
Q |
| |
|
|||| |||||| ||||||| |||| |||| | ||||||||||||| ||||||||||||||| ||||||||||| ||| |||| |||||||||||| |
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|
| T |
39461648 |
tttagttcatatttgattcacaataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatc |
39461549 |
T |
|
| Q |
175 |
tctttcactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
|||||||||||||| || || ||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
39461548 |
tctttcactttctttctgacctctccatccttttccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttag |
39461461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 39452390 - 39452208
Alignment:
| Q |
80 |
ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt |
179 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||| | | |||||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
39452390 |
ttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactcttttcactcatctcttt |
39452291 |
T |
|
| Q |
180 |
cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttag |
262 |
Q |
| |
|
|| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||||||||||| |
|
|
| T |
39452290 |
catttttttcctgaactctccatccttatccaacacactccttattcctttctcaatcttgtcagcagtcaaaagatagttag |
39452208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 43311313 - 43311472
Alignment:
| Q |
80 |
ttcatacctgattcataatataatcaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt |
179 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||| | | ||| ||||||||||| |||||||| |||||| ||| | ||||||||||||||| |
|
|
| T |
43311313 |
ttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctcttt |
43311412 |
T |
|
| Q |
180 |
cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatctt |
239 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||||||||||| |||| ||||| |
|
|
| T |
43311413 |
cactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatctt |
43311472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 39452831 - 39452943
Alignment:
| Q |
150 |
agtcttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagtt |
249 |
Q |
| |
|
||||||||||| | ||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||| || || |||||| |
|
|
| T |
39452831 |
agtcttcttacatgtttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagtt |
39452930 |
T |
|
| Q |
250 |
acaagatagttag |
262 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
39452931 |
aaaagagagttag |
39452943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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