View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3841_low_3 (Length: 773)

Name: NF3841_low_3
Description: NF3841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3841_low_3
NF3841_low_3
[»] chr3 (8 HSPs)
chr3 (16-750)||(49972644-49973373)
chr3 (216-450)||(49856484-49856718)
chr3 (196-450)||(50815334-50815594)
chr3 (196-450)||(50860270-50860530)
chr3 (194-450)||(39559549-39559805)
chr3 (293-411)||(49971649-49971767)
chr3 (221-332)||(49867988-49868099)
chr3 (561-607)||(49979167-49979213)
[»] scaffold0543 (1 HSPs)
scaffold0543 (195-450)||(2001-2256)
[»] scaffold0492 (1 HSPs)
scaffold0492 (195-450)||(3547-3802)
[»] chr7 (10 HSPs)
chr7 (231-450)||(19369820-19370039)
chr7 (302-450)||(35053691-35053836)
chr7 (292-354)||(34355325-34355387)
chr7 (40-93)||(34355626-34355679)
chr7 (285-330)||(19929350-19929395)
chr7 (40-93)||(35048072-35048125)
chr7 (621-681)||(37829974-37830034)
chr7 (628-683)||(35451133-35451188)
chr7 (287-324)||(19935629-19935666)
chr7 (287-324)||(19966768-19966805)
[»] chr4 (4 HSPs)
chr4 (627-728)||(38020379-38020479)
chr4 (640-728)||(2097090-2097177)
chr4 (622-671)||(3678319-3678368)
chr4 (692-728)||(20228274-20228311)
[»] chr1 (2 HSPs)
chr1 (627-728)||(10799205-10799305)
chr1 (638-683)||(15682171-15682216)
[»] chr2 (2 HSPs)
chr2 (621-682)||(41508139-41508200)
chr2 (622-667)||(25726934-25726979)
[»] chr8 (3 HSPs)
chr8 (628-683)||(26055500-26055555)
chr8 (622-683)||(16622593-16622653)
chr8 (692-728)||(40354750-40354787)
[»] chr6 (2 HSPs)
chr6 (628-671)||(3004848-3004891)
chr6 (692-728)||(21537473-21537510)
[»] scaffold0244 (1 HSPs)
scaffold0244 (286-327)||(5736-5777)


Alignment Details
Target: chr3 (Bit Score: 673; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 16 - 750
Target Start/End: Complemental strand, 49973373 - 49972644
Alignment:
Q  16 ctattgatatttaagtgtctcatgaagttgcttcaatattgtcccaaacttcaaattcttatcattgacaaggtttgtaataatgttaattaattttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49973373 ctattgatatttaagtgtctcatgaagttgcttcaatattgtcccaaacttcaaattcttatcattgacaaggtttgtaataatgttaattaattttttg 49973274  T
Q  116 ttagttgcattccgtatataatatattcaactgtgtatgtgtatggttttcaggttattacaccaagagaatatttccatgacaaagattgggaggaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49973273 ttagttgcattccgtatataatatattcaactgtgtatgtgtatggttttcaggttattacaccaagagaatatttccatgacaaagattgggaggaaca 49973174  T
Q  216 agaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49973173 agaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatg 49973074  T
Q  316 aagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaaggaattatctttgtgcctaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49973073 aagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaaggaattatctttgtgcctaa 49972974  T
Q  416 agaattcaaccacatgtaaacttttatttatttgactgctacatgcatgcattatgatatatatatttacattacaagtgttgaactactatcttgactt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  49972973 agaattcaaccacatgtaaacttttatttatttgactgctacatgcatgcattatgat----atatttacattacaagtgttgaactactatcttgactt 49972878  T
Q  516 gattagtgataaacaaagtggatgtgtttaggtagcaatgaaattaattgtttgttcctctccctcctcttttgaactgcaattacttttttgtcaannn 615  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  49972877 gattagtgataaacaaagtggatgtgtttgggtagcaatgaaattaattgtttgttcctctccctcctcttttgaactgcaattacttttttgtcaa-tt 49972779  T
Q  616 nnnnngaatgaaaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaaccgatagtaactccaactccttaaccttagctca 715  Q
         ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  49972778 tttttgaatgaaaaatgttagtaattagttgttatattaatctttactcatttatccgagtttgaaccagtagtaactccaactccttaaccttagctca 49972679  T
Q  716 aactagttgagctgaattaaaatcgttgacatatt 750  Q
    |||||||||||||||||||||||||||||||||||    
T  49972678 aactagttgagctgaattaaaatcgttgacatatt 49972644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 216 - 450
Target Start/End: Complemental strand, 49856718 - 49856484
Alignment:
Q  216 agaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatg 315  Q
    ||||||||| ||| |||||||||||||  ||||  |||||||||||||||||| |||| |  |||| | ||| |||||||| |||||||||||||| |||    
T  49856718 agaaattgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatg 49856619  T
Q  316 aagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaaggaattatctttgtgcctaa 415  Q
     |||||||||||||||| |||  |||||||||||||||||||||||| || ||||||| ||||||| ||||||||  |  ||||||||||| || || ||    
T  49856618 cagaattcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaatacaaagatccaaatgtcattggaattatcttcgttcccaa 49856519  T
Q  416 agaattcaaccacatgtaaacttttatttatttga 450  Q
     ||||||||||||||||  |||| |||||||||||    
T  49856518 tgaattcaaccacatgtccacttctatttatttga 49856484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 196 - 450
Target Start/End: Original strand, 50815334 - 50815594
Alignment:
Q  196 gacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttc 295  Q
    ||||||||||||||||| | |  |||||||||| |||||||||||||  ||||  |||||||||| ||| |||||||| |  |||||| ||||||| |||    
T  50815334 gacaaagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttc 50815433  T
Q  296 actttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaa 395  Q
    | ||||| || ||||| ||   ||||||||||||||| ||| |||||| ||||||||||||  ||| | |||| |||| |||||||| |||||||   |     
T  50815434 aatttgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaagcaccaaatgttcat 50815533  T
Q  396 ggaatt---atctttgtgcctaaagaattca---accacatgtaaacttttatttatttga 450  Q
    ||| ||   ||||||||||| || || ||||   ||||||||| |||||||||||||||||    
T  50815534 ggagttgtcatctttgtgcccaaggatttcagccaccacatgtcaacttttatttatttga 50815594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 196 - 450
Target Start/End: Complemental strand, 50860530 - 50860270
Alignment:
Q  196 gacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttc 295  Q
    ||||||||||||||||| | |  |||||||||| |||||||||||||  ||||  |||||||||| ||| |||||||| |  |||||| ||||||| |||    
T  50860530 gacaaagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttc 50860431  T
Q  296 actttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaa 395  Q
    | ||||| || ||||| ||   ||||||||||||||| ||| |||||| ||||||||||||  ||| | |||| |||| |||||||| |||||||   |     
T  50860430 aatttgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaagcaccaaatgttcat 50860331  T
Q  396 ggaatt---atctttgtgcctaaagaattca---accacatgtaaacttttatttatttga 450  Q
    ||| ||   ||||||||||| || || ||||   ||||||||| |||||||||||||||||    
T  50860330 ggagttgtcatctttgtgcccaaggatttcagccaccacatgtcaacttttatttatttga 50860270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 194 - 450
Target Start/End: Original strand, 39559549 - 39559805
Alignment:
Q  194 atgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagct 293  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||| |||||  ||||   ||||||||| |||| ||||||| |  |||| |  |||||| |    
T  39559549 atgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtt 39559648  T
Q  294 tcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctaga-tacaactacaaagctccaaatgaa 392  Q
    ||| ||||| |||||||| ||| |||||||||||||| | ||  |||||| ||||||||||||||||| | |||| | ||| |||||||| |||||||      
T  39559649 tcaatttgctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaa-tacaaagcaccaaatgtt 39559747  T
Q  393 aaaggaattatctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga 450  Q
     | ||||||||||||||||| ||||  |||| |||||||  |||||||||| ||||||    
T  39559748 catggaattatctttgtgcccaaaggtttcagccacatgccaacttttattcatttga 39559805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 49971767 - 49971649
Alignment:
Q  293 ttcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaa 392  Q
    |||| |||||||||||||| ||| |||||||||||| | | ||| | |||| ||||||| ||||||||| ||||||||||  | |||| | |||||||      
T  49971767 ttcaatttgcaaaatatataatgcagaattcaagagcattaagcacaatgacaattcagtgtgccaaatacctagatacagatgcaaaacaccaaatgtt 49971668  T
Q  393 aaaggaattatctttgtgc 411  Q
     | ||||||||||||||||    
T  49971667 catggaattatctttgtgc 49971649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 221 - 332
Target Start/End: Complemental strand, 49868099 - 49867988
Alignment:
Q  221 ttgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaa 320  Q
    |||||||| ||||||||| |||  ||||  |||| |||||||||||||||||  |  |||| | ||||||| |||  |||||||||||||| ||| ||||    
T  49868099 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 49868000  T
Q  321 ttcaagagtact 332  Q
    |||| |||||||    
T  49867999 ttcaggagtact 49867988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 49979213 - 49979167
Alignment:
Q  561 aattgtttgttcctctccctcctcttttgaactgcaattactttttt 607  Q
    ||||||| |||| |||||||||||||||||||| |||||| ||||||    
T  49979213 aattgttcgttcatctccctcctcttttgaactacaattagtttttt 49979167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 195 - 450
Target Start/End: Complemental strand, 2256 - 2001
Alignment:
Q  195 tgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagctt 294  Q
    ||||||||  |||||||| | | || ||||||||| ||| ||||||||  ||||  ||||||||||||||||||||||  |  |||| | ||||||||||    
T  2256 tgacaaaggatgggaggacccaaaagttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagctt 2157  T
Q  295 cactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaa 394  Q
    |  ||||||| |||||| ||| ||||||||||| || |  || |||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||   |    
T  2156 ccatttgcaagatatatcatgcagaattcaagaatattacgcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaatgttca 2057  T
Q  395 aggaattatctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga 450  Q
     |||||||| |||||||| || |||||||| ||||||| |||||||||||||||||    
T  2056 tggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttga 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 195 - 450
Target Start/End: Complemental strand, 3802 - 3547
Alignment:
Q  195 tgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagctt 294  Q
    ||||||||  |||||||| | | || ||||||||| ||| ||||||||  ||||  ||||||||||||||||||||||  |  |||| | ||||||||||    
T  3802 tgacaaaggatgggaggacccaaaagttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagctt 3703  T
Q  295 cactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaa 394  Q
    |  ||||||| |||||| ||| ||||||||||| || |  || |||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||   |    
T  3702 ccatttgcaagatatatcatgcagaattcaagaatattacgcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaatgttca 3603  T
Q  395 aggaattatctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga 450  Q
     |||||||| |||||||| || |||||||| ||||||| |||||||||||||||||    
T  3602 tggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttga 3547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 231 - 450
Target Start/End: Complemental strand, 19370039 - 19369820
Alignment:
Q  231 atgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaattcaagagta 330  Q
    ||||||||||||  ||||  |||||||||||||||||||||| ||  || | |  |||||| |||| ||||||||||||||  ||||||| |||| ||||    
T  19370039 atgccttttatctcatctcacaacatgctcacttagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaacagta 19369940  T
Q  331 cttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaaggaattatctttgtgcctaaagaattcaaccacat 430  Q
    || | | |||||| |||||||| |||| |||   ||||||||| |||||| ||||||| ||  |||||||||||| | |||| || |||||| ||| |||    
T  19369939 ctaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaacgatcaaggaattatctctctgccaaaggaattccaccgcat 19369840  T
Q  431 gtaaacttttatttatttga 450  Q
    || |||||||||||||||||    
T  19369839 gtcaacttttatttatttga 19369820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 302 - 450
Target Start/End: Original strand, 35053691 - 35053836
Alignment:
Q  302 caaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaatgaaaaaggaatt 401  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||| | ||||||||  ||||||||  |||||||  | ||||  || ||||||    
T  35053691 caaaatatattatgaagaattcaagagtacttagcgtcatgaccattcagattcccaaattcacagatacaaacacaaagcatcgaatggtaatggaatt 35053790  T
Q  402 atctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga 450  Q
    ||||  |||||  |||| ||||   ||||||||||||||||||||||||    
T  35053791 atctccgtgccccaagagttca---acatgtaaacttttatttatttga 35053836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 34355387 - 34355325
Alignment:
Q  292 cttcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagt 354  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| |||||  |||||||||    
T  34355387 cttcactttgcaaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagt 34355325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 34355679 - 34355626
Alignment:
Q  40 aagttgcttcaatattgtcccaaacttcaaattcttatcattgacaaggtttgt 93  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||    
T  34355679 aagttgcttgaatattgtcccaaacttcaaagtcttatcattgaagaggtttgt 34355626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 19929350 - 19929395
Alignment:
Q  285 ttgtgagcttcactttgcaaaatatattatgaagaattcaagagta 330  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  19929350 ttgtgagcttcaatttgcaaaatatattatgcagaattcaaaagta 19929395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 35048072 - 35048125
Alignment:
Q  40 aagttgcttcaatattgtcccaaacttcaaattcttatcattgacaaggtttgt 93  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||  ||||||||    
T  35048072 aagttgcttgaatattgtcccaaactttaaagtcttatcattgatgaggtttgt 35048125  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 681
Target Start/End: Complemental strand, 37830034 - 37829974
Alignment:
Q  621 gaatgaaaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaa 681  Q
    |||||| |||||||||||||||||||||| |||||| | ||||| ||| |||| |||||||    
T  37830034 gaatgacaaatgttagtaattagttgttagattaatatctactccttcgtccgggtttgaa 37829974  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 683
Target Start/End: Original strand, 35451133 - 35451188
Alignment:
Q  628 aaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaacc 683  Q
    |||||||| ||||||||||||| |||||| ||||||||||| |  |||||||||||    
T  35451133 aaatgttaataattagttgttagattaatatttactcattcgtttgagtttgaacc 35451188  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 19935629 - 19935666
Alignment:
Q  287 gtgagcttcactttgcaaaatatattatgaagaattca 324  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  19935629 gtgagcttcaatttgcaaaatatattatgcagaattca 19935666  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 19966768 - 19966805
Alignment:
Q  287 gtgagcttcactttgcaaaatatattatgaagaattca 324  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  19966768 gtgagcttcaatttgcaaaatatattatgcagaattca 19966805  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 728
Target Start/End: Complemental strand, 38020479 - 38020379
Alignment:
Q  627 aaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaaccgatagtaactccaactccttaa-ccttagctcaaactagttga 725  Q
    |||||||||||||| |||||||| |||||| ||||||| ||| |||| |||||||||  | | | |||||||||||||| ||||||||||||| ||||||    
T  38020479 aaaatgttagtaatcagttgttagattaatatttactccttcgtccgggtttgaacc--ttggacctccaactccttaacccttagctcaaaccagttga 38020382  T
Q  726 gct 728  Q
    |||    
T  38020381 gct 38020379  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 728
Target Start/End: Complemental strand, 2097177 - 2097090
Alignment:
Q  640 ttagttgttatattaatctttactcattcatccgagtttgaaccgatagtaactccaactccttaacc-ttagctcaaactagttgagct 728  Q
    |||||||||| |||||| |||||||  |  |||| ||||||||| |  | | |||||||||||||||| |||||||||||||||||||||    
T  2097177 ttagttgttagattaatatttactcccttgtccgggtttgaaccca--ggacctccaactccttaacccttagctcaaactagttgagct 2097090  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 671
Target Start/End: Original strand, 3678319 - 3678368
Alignment:
Q  622 aatgaaaaatgttagtaattagttgttatattaatctttactcattcatc 671  Q
    ||||| ||||||||| |||||||||||| |||||| |||||| |||||||    
T  3678319 aatgataaatgttagcaattagttgttaaattaatatttacttattcatc 3678368  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 728
Target Start/End: Complemental strand, 20228311 - 20228274
Alignment:
Q  692 ctccaactccttaacc-ttagctcaaactagttgagct 728  Q
    |||||||||||||||| |||||||||||||||||||||    
T  20228311 ctccaactccttaacccttagctcaaactagttgagct 20228274  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 728
Target Start/End: Complemental strand, 10799305 - 10799205
Alignment:
Q  627 aaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaaccgatagtaactccaactcctta-accttagctcaaactagttga 725  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||  |||||||||   || |||| ||||| ||||  ||||||||||||||||||||    
T  10799305 aaaatgttagtaattagttgttagattaatatttactccttcatcctggtttgaacc--caggaacttcaactacttatcccttagctcaaactagttga 10799208  T
Q  726 gct 728  Q
    |||    
T  10799207 gct 10799205  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 683
Target Start/End: Original strand, 15682171 - 15682216
Alignment:
Q  638 aattagttgttatattaatctttactcattcatccgagtttgaacc 683  Q
    |||||||||||| |||||| ||||||| |||||||| |||||||||    
T  15682171 aattagttgttagattaatatttactccttcatccgggtttgaacc 15682216  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 41508139 - 41508200
Alignment:
Q  621 gaatgaaaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaac 682  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  41508139 gaatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaac 41508200  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 667
Target Start/End: Original strand, 25726934 - 25726979
Alignment:
Q  622 aatgaaaaatgttagtaattagttgttatattaatctttactcatt 667  Q
    ||||||||||||||||| ||| |||||| |||||| ||||||||||    
T  25726934 aatgaaaaatgttagtagttaattgttagattaatatttactcatt 25726979  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 683
Target Start/End: Complemental strand, 26055555 - 26055500
Alignment:
Q  628 aaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaacc 683  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||| | ||||||||||    
T  26055555 aaatgttagtaattagttattagattaatatttactctttcattcaagtttgaacc 26055500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 683
Target Start/End: Original strand, 16622593 - 16622653
Alignment:
Q  622 aatgaaaaatgttagtaattagttgttatattaatctttactcattcatccgagtttgaacc 683  Q
    ||||| |||||||||||||||||||||| |||| | ||| ||| || |||||||||||||||    
T  16622593 aatgacaaatgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacc 16622653  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 728
Target Start/End: Complemental strand, 40354787 - 40354750
Alignment:
Q  692 ctccaactccttaac-cttagctcaaactagttgagct 728  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  40354787 ctccaactccttaactcttagctcaaactagttgagct 40354750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 671
Target Start/End: Original strand, 3004848 - 3004891
Alignment:
Q  628 aaatgttagtaattagttgttatattaatctttactcattcatc 671  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  3004848 aaatgttagtaattagttgttagattaatatttgctcattcatc 3004891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 728
Target Start/End: Complemental strand, 21537510 - 21537473
Alignment:
Q  692 ctccaactccttaacc-ttagctcaaactagttgagct 728  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21537510 ctccaactccttaacccttagctcaaactagttgagct 21537473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 5777 - 5736
Alignment:
Q  286 tgtgagcttcactttgcaaaatatattatgaagaattcaaga 327  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  5777 tgtgagcttcagttagcaaaatatattttgaagaattcaaga 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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