View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3841_low_5 (Length: 254)
Name: NF3841_low_5
Description: NF3841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3841_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 2928960 - 2929180
Alignment:
| Q |
24 |
acatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgttt |
123 |
Q |
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| T |
2928960 |
acatccgacagacatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgttt |
2929059 |
T |
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| Q |
124 |
ctctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtt |
223 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929060 |
ctctctctcagcaatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtt |
2929159 |
T |
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| Q |
224 |
tgtattcttcaaagccctttg |
244 |
Q |
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||||||||||||||||||||| |
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| T |
2929160 |
tgtattcttcaaagccctttg |
2929180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 2310049 - 2309867
Alignment:
| Q |
53 |
ctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatcaataatatt |
152 |
Q |
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|||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| ||||| ||||| ||||||||||||| ||||| |
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| T |
2310049 |
ctaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattttctttctttctctttgcaatgcatcaattatatt |
2309956 |
T |
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| Q |
153 |
gttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct |
241 |
Q |
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||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309955 |
attgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct |
2309867 |
T |
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