View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3842_high_4 (Length: 248)
Name: NF3842_high_4
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3842_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9639651 - 9639887
Alignment:
| Q |
1 |
tgggccttaaaattaaaaaccaagaaggnnnnnnncattatttttcaataagttcgagaaaaatttcattttcaaaccttcttcatggacaatttctcct |
100 |
Q |
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| T |
9639651 |
tgggccttaaaattaaaaaccaagaagaaaaaaaacgttatttttcaataagttcgagaaaaatttcattttcaaaccttcttcatagacaatttctcct |
9639750 |
T |
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| Q |
101 |
aattctgttatatatttgacaatatgtttaataattgattctccactttcaccataaaccttattaagtttacggactttaatctcccttg-aattttac |
199 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
9639751 |
aattctgtcatatatttgacaacatgtttaataattgattctccactttcaccataaactttattaagtttacggactttaatctcccttgaaatttta- |
9639849 |
T |
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| Q |
200 |
ggactgttgtacccaatctaggaaagagaaatgcctttg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9639850 |
-gactgttgtacccaatctaggaaagagaaatgcctttg |
9639887 |
T |
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