View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3842_low_1 (Length: 457)
Name: NF3842_low_1
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3842_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 1516456 - 1516014
Alignment:
| Q |
11 |
catcatcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgc |
110 |
Q |
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| T |
1516456 |
catcatcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgc |
1516357 |
T |
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| Q |
111 |
agcagcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttg |
210 |
Q |
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| T |
1516356 |
agcagcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttg |
1516257 |
T |
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| Q |
211 |
caagcaagtaatatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacattgactgaccatttcaataacttcagattcattt |
310 |
Q |
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| T |
1516256 |
caagcaagtaatatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacgttgactgaccatttcaataacttcagattcattt |
1516157 |
T |
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| Q |
311 |
ccagtcagcccttcaatatcatatgtctctggatgttcctacannnnnnnagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaa |
410 |
Q |
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| T |
1516156 |
ccagttagcccttcaatatcatatttctctggatgttcctacatttttttagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaa |
1516057 |
T |
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| Q |
411 |
ctagaaagagttttaacctttgcatcatgttccagctgcttat |
453 |
Q |
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| T |
1516056 |
ctagaaagagtttaaacctttgcatcatgttccagctgcttat |
1516014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 36613535 - 36613686
Alignment:
| Q |
14 |
catcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagc |
113 |
Q |
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| T |
36613535 |
catcatcggcgccactttcttcttctgaatctatttcactatcatc---agcagccaatgaaatcacaggctgacaactggaaacagctgactctgcagc |
36613631 |
T |
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| Q |
114 |
agcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccag |
168 |
Q |
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| T |
36613632 |
tgccacagcctctggtgtatgaagatcagcaacaccaagcatcaaatcctgccag |
36613686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 36613768 - 36613853
Alignment:
| Q |
268 |
gataaaacattgactgaccatttcaataacttcagattcatttccagtcagcccttcaatatcatatgtctctggatgttcctaca |
353 |
Q |
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| T |
36613768 |
gatagaacattgactaaccatttcaataacttcggattcatttcccgttagctcttcaaaatcatatttctctggatggtcctaca |
36613853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 36613909 - 36613972
Alignment:
| Q |
392 |
gtaaaaattatatcttcaactagaaa--gagttttaacctttgcatcatgttccagctgcttat |
453 |
Q |
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| T |
36613909 |
gtaaaaattatatcttcaattagaaatcaagctttaacctttgcatcatgctccaaccgcttat |
36613972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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