View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3842_low_2 (Length: 349)
Name: NF3842_low_2
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3842_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 32489153 - 32488825
Alignment:
| Q |
5 |
gtagcataggcccaagaattccacactattgcgatgacatggcataagtgagtacccacaaagtatggactactagatcatgattgggtgttagattccc |
104 |
Q |
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| T |
32489153 |
gtagcatagtcccaagaattccacactattgcgatgacatggcataagtgagtacccacaaagtatggactactagatcatgattgggtgttagattccc |
32489054 |
T |
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| Q |
105 |
ttatccttcccatacttcgcccgtaccgtaacatagctgaaactcaactcaatcaaactcaaacattgcgaatccaaaggcaaaatctgtgtctgtctga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32489053 |
ttatccttcccatacttcgcccgtaccgtaacatagctgaaactcaactcaatcaaactcaaacattgcgaatccaaaggcaaaatctgtgtctgtctga |
32488954 |
T |
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| Q |
205 |
aacaaaacacttcaattgaaatcaaacatgttttgcggcgtagttagcacttccttcgcttccattttacccagaaaacaacaccactccacaccctttt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32488953 |
aacaaaacacttcaattgaaatcaaacatgttttgcggcgtagttagcacttccttcacttccattttacccagaaaacaacaccactccacaccctttt |
32488854 |
T |
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| Q |
305 |
ccccattcaaatctattcaatgttctctt |
333 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
32488853 |
ccccattcaaatccattcaatgttctctt |
32488825 |
T |
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