View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3842_low_5 (Length: 276)

Name: NF3842_low_5
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3842_low_5
NF3842_low_5
[»] chr4 (8 HSPs)
chr4 (16-260)||(8567682-8567926)
chr4 (49-260)||(8586425-8586636)
chr4 (158-260)||(8591523-8591625)
chr4 (166-262)||(8537672-8537768)
chr4 (23-139)||(51339999-51340115)
chr4 (66-144)||(5994946-5995024)
chr4 (71-144)||(3976416-3976489)
chr4 (165-221)||(8577578-8577634)
[»] scaffold1450 (1 HSPs)
scaffold1450 (158-260)||(297-399)
[»] chr2 (4 HSPs)
chr2 (24-160)||(19953403-19953539)
chr2 (56-144)||(19193571-19193659)
chr2 (71-144)||(20458935-20459008)
chr2 (23-144)||(42669765-42669886)
[»] chr7 (5 HSPs)
chr7 (16-135)||(46994391-46994510)
chr7 (24-144)||(23434720-23434839)
chr7 (23-139)||(24845465-24845581)
chr7 (23-111)||(25003417-25003505)
chr7 (66-143)||(33852548-33852625)
[»] chr8 (5 HSPs)
chr8 (15-137)||(34366720-34366842)
chr8 (23-144)||(45524911-45525032)
chr8 (85-144)||(2471349-2471408)
chr8 (24-139)||(37927509-37927624)
chr8 (38-140)||(14636081-14636183)
[»] chr6 (3 HSPs)
chr6 (23-158)||(26170926-26171061)
chr6 (64-144)||(25326855-25326935)
chr6 (64-144)||(26159390-26159470)
[»] chr5 (3 HSPs)
chr5 (23-137)||(5630525-5630639)
chr5 (80-144)||(10299909-10299973)
chr5 (23-135)||(7585019-7585131)
[»] chr3 (5 HSPs)
chr3 (23-137)||(21175522-21175636)
chr3 (28-127)||(10798317-10798416)
chr3 (85-144)||(17440254-17440313)
chr3 (23-144)||(214059-214179)
chr3 (38-144)||(22813322-22813428)
[»] chr1 (3 HSPs)
chr1 (23-136)||(25010025-25010137)
chr1 (64-137)||(40125915-40125988)
chr1 (71-135)||(21970361-21970425)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 8567926 - 8567682
Alignment:
Q  16 tctctaccactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8567926 tctctaccactcacttttttaatggcttaaatcatgacgagtcgcatgctttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgca 8567827  T
Q  116 ataagagaatgaatgttgaagagaatgttcctatcattcctcttttgattaagtggaaagagggaagttataggaagacaattgagaattggatttagtc 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  8567826 ataagagaatgaatgttgaagagagtgttcctatcattcctcttttgattaagtgaaaagagggaagttataggaagacaattgagaattggatttagtt 8567727  T
Q  216 agaaaattaatgcatattgaaacacaataatgtttctttccatac 260  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||    
T  8567726 agaaaattaatgcatattgagacaccataatgtttctttcaatac 8567682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 8586636 - 8586425
Alignment:
Q  49 atgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgttccta 148  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8586636 atgacgagtcgcatgctttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagagtgttccta 8586537  T
Q  149 tcattcctcttttgattaagtggaaagagggaagttataggaagacaattgagaattggatttagtcagaaaattaatgcatattgaaacacaataatgt 248  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||    
T  8586536 tcattcctcttttgattaagtgaaaagagggaagttataggaagacaattgagaattggatttagttagaaaattaatgcatattgagacaccataatgt 8586437  T
Q  249 ttctttccatac 260  Q
    ||||||| ||||    
T  8586436 ttctttcaatac 8586425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 8591625 - 8591523
Alignment:
Q  158 ttttgattaagtggaaagagggaagttataggaagacaattgagaattggatttagtcagaaaattaatgcatattgaaacacaataatgtttctttcca 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| |    
T  8591625 ttttggttaagtggaaagagggaagttataggaagacaattgagaattgaatttagttagaaaattaatgcatattgagacaccataatgtttctttcaa 8591526  T
Q  258 tac 260  Q
    |||    
T  8591525 tac 8591523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 8537768 - 8537672
Alignment:
Q  166 aagtggaaagagggaagttataggaagacaattgagaattggatttagtcagaaaattaatgcatattgaaacacaataatgtttctttccataccc 262  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | || | |||||||||||||| ||||||    
T  8537768 aagtggaaagagggaagttataggaagacaattgagaattgaatttagttagaaaattaatgcatattaagactccataatgtttctttcgataccc 8537672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 51339999 - 51340115
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||| ||| ||| |||||||||| ||   | ||||||  |||||| ||| | ||||||| |||| |||||||| |||| |||||||||  ||||| ||    
T  51339999 cactcattttcttattggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaagcggtgggtcgtacattggtttcatcaaataaaag 51340098  T
Q  123 aatgaatgttgaagaga 139  Q
    |||||||||||||||||    
T  51340099 aatgaatgttgaagaga 51340115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 5994946 - 5995024
Alignment:
Q  66 ttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||| ||||| || |||| ||||||||| |||||||| | |||| || |||||||||||||| |||| |||||| ||||    
T  5994946 ttggaaatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgttaaagagagtgtt 5995024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 3976416 - 3976489
Alignment:
Q  71 aatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    ||||| || |||| ||| |||||| ||||||| |||||| ||  ||||||||||||| ||||||||||| ||||    
T  3976416 aatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagagtgtt 3976489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 8577634 - 8577578
Alignment:
Q  165 taagtggaaagagggaagttataggaagacaattgagaattggatttagtcagaaaa 221  Q
    |||||||||| |||| ||||||||||||| |||||| || || ||||||| ||||||    
T  8577634 taagtggaaaaaggggagttataggaagagaattgataactgtatttagttagaaaa 8577578  T

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Target: scaffold1450 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 399 - 297
Alignment:
Q  158 ttttgattaagtggaaagagggaagttataggaagacaattgagaattggatttagtcagaaaattaatgcatattgaaacacaataatgtttctttcca 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |    
T  399 ttttggttaagtggaaagagggaagttataggaagacaattgagaattggatttagtaagaaaattaatgcatattgagacaccataatgtttctttcaa 300  T
Q  258 tac 260  Q
    |||    
T  299 tac 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 19953539 - 19953403
Alignment:
Q  24 actcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagaga 123  Q
    ||||||||||||| ||| |||||| ||   ||||||||  |||||| ||||| || |||| |||||||||||||||||| ||||||||| |||||| |||    
T  19953539 actcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtggtgggtcatacattggtttcatccaataaaaga 19953440  T
Q  124 atgaatgttgaagagaatgttcctatcattcctcttt 160  Q
    |||| ||||||||||||||| | || |||||||||||    
T  19953439 atgagtgttgaagagaatgtccttagcattcctcttt 19953403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 19193571 - 19193659
Alignment:
Q  56 gtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    ||||||| |||||| ||| | ||||||| |||||||||||||||||| |||||| || |||||||||||||| |||| |||||| ||||    
T  19193571 gtctcatactttggaaataggtttcacttaaagtggtgggtcatacattggttttatccaataagagaatgagtgttcaagagagtgtt 19193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 20459008 - 20458935
Alignment:
Q  71 aatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    ||||| || |||||||||||||| |||| ||||||||||||| |||||||||||||| |||| |||||| ||||    
T  20459008 aatgggttccactcaaagtggtgagtcaaacaatggtttcatccaataagagaatgagtgtttaagagagtgtt 20458935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 42669765 - 42669886
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||||| | |||||||||| |||  | || |||  |||||| ||||| ||||||| |||||||||||||||||| || ||  || ||||||||     
T  42669765 cactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaa 42669864  T
Q  123 aatgaatgttgaagagaatgtt 144  Q
    ||||| ||||||||||| ||||    
T  42669865 aatgagtgttgaagagagtgtt 42669886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 46994391 - 46994510
Alignment:
Q  16 tctctaccactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgca 115  Q
    |||||| |||||||||||||| |||||||||| |||  | ||||||  |||||| ||||||| ||||| |||||||||||||||||| || ||||||  |    
T  46994391 tctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtggtgggtcatacattgatttcatcta 46994490  T
Q  116 ataagagaatgaatgttgaa 135  Q
    |||| | |||||||||||||    
T  46994491 ataaaaaaatgaatgttgaa 46994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 23434839 - 23434720
Alignment:
Q  24 actcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagaga 123  Q
    ||||||||||||| ||||||||||||||  | ||||||  |||| | ||||  || |||| |||||||||| ||||||| |||||| || ||||||||||    
T  23434839 actcacttttttattggcttaaattatggtgggtctcacactttagaaatgtgtt-cacttaaagtggtggatcatacattggttttatccaataagaga 23434741  T
Q  124 atgaatgttgaagagaatgtt 144  Q
    |||| ||||||||||| ||||    
T  23434740 atgagtgttgaagagagtgtt 23434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 24845465 - 24845581
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||| | | |||||||||| |||  ||||||||  |||||| ||||| || |||| |||||||||||||| ||| |||||| |  |||| |||     
T  24845465 cactcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattggtttaagccaattagaa 24845564  T
Q  123 aatgaatgttgaagaga 139  Q
    | |||||||||||||||    
T  24845565 agtgaatgttgaagaga 24845581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 25003505 - 25003417
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttca 111  Q
    |||||||||||||| ||||||||||||||| | ||||||  |||||| ||||  || || ||||| |||||| ||||||||| ||||||    
T  25003505 cactcacttttttattggcttaaattatgatgggtctcacactttggaaatgacttccattcaaaatggtggctcatacaatagtttca 25003417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 33852548 - 33852625
Alignment:
Q  66 ttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgt 143  Q
    |||| |||||||| |||| ||||||||||| |||||| |  ||||||  ||||||||||||| |||| ||||||||||    
T  33852548 ttggaaatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagagaatgt 33852625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 34366720 - 34366842
Alignment:
Q  15 atctctaccactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgc 114  Q
    |||||| ||||||||||||||| || ||||||| |||    |||||||  ||| | ||||||||||| |||||||||||| ||||||||||||||||| |    
T  34366720 atctctgccactcacttttttattgacttaaataatggtaggtctcatattttagaaatggatttcattcaaagtggtggatcatacaatggtttcatcc 34366819  T
Q  115 aataagagaatgaatgttgaaga 137  Q
    ||||| | |||||| ||||||||    
T  34366820 aataaaaaaatgaacgttgaaga 34366842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 45524911 - 45525032
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||||| | |||||||||| |||  | || |||  |||||| ||||| || ||||||||||||||||||||||| || ||| || ||||||||     
T  45524911 cactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgattttatccaataagaa 45525010  T
Q  123 aatgaatgttgaagagaatgtt 144  Q
    ||||| ||||||||||| ||||    
T  45525011 aatgagtgttgaagagagtgtt 45525032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 2471349 - 2471408
Alignment:
Q  85 aaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||||||||||||||||||  ||||||| |||||| ||||||||||||||||||| ||||    
T  2471349 aaagtggtgggtcatacaacagtttcatccaataaaagaatgaatgttgaagagagtgtt 2471408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 37927509 - 37927624
Alignment:
Q  24 actcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagaga 123  Q
    ||||| ||||||| |||||||||| ||   ||||||||   ||||| ||| |||   ||| |||||| || |||||||| ||||||||| ||| ||||||    
T  37927509 actcatttttttattggcttaaatcatagtgagtctcacattttggaaatagatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 37927608  T
Q  124 atgaatgttgaagaga 139  Q
    |||| |||||||||||    
T  37927609 atgagtgttgaagaga 37927624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 14636183 - 14636081
Alignment:
Q  38 tggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaaga 137  Q
    |||||||||| |||| | ||||||  ||||   ||||| || || ||||| |||||||||||| ||||||||||  |||||||| ||||| ||||||| |    
T  14636183 tggcttaaataatgatgggtctcacactttaaaaatggtttccattcaaaatggtgggtcatataatggtttcacccaataagaaaatgagtgttgaaaa 14636084  T
Q  138 gaa 140  Q
    |||    
T  14636083 gaa 14636081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 26170926 - 26171061
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||||| | || |||||||||||  | || |||  |||||| ||||| || |||| |||||||||||||||||| || ||| || ||||||||     
T  26170926 cactcactttttaactgacttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaa 26171025  T
Q  123 aatgaatgttgaagagaatgttcctatcattcctct 158  Q
    ||||| ||||||| ||| ||| ||||||||||||||    
T  26171026 aatgagtgttgaaaagagtgtccctatcattcctct 26171061  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 25326935 - 25326855
Alignment:
Q  64 ctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||||| ||||| || |||| |||||||||||||||||| || ||| || |||||||| ||||| ||||||||||| ||||    
T  25326935 ctttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgtt 25326855  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 26159470 - 26159390
Alignment:
Q  64 ctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||||| ||||| || |||| |||||||||||||||||| || ||| || |||||||| ||||| ||||||||||| ||||    
T  26159470 ctttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgtt 26159390  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 5630639 - 5630525
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||| ||| ||||||||||||||  | ||||||| |||||  ||||||||||| ||||| ||||||||||||||||| ||| |  |||||| |     
T  5630639 cactcactttattattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcatacaatgatttaacccaataaaaa 5630540  T
Q  123 aatgaatgttgaaga 137  Q
    ||| |||||||||||    
T  5630539 aataaatgttgaaga 5630525  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 10299973 - 10299909
Alignment:
Q  80 cactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||| ||||||||||||||| || ||| ||||| |||||||||||||| ||||||||||| ||||    
T  10299973 cactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagagtgtt 10299909  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 7585131 - 7585019
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||| ||| | | |||||||| |  ||||||||  | |||| ||||| ||||||| |||||| | || |||||| | ||||||| |||||||||    
T  7585131 cactcactttattatttgtttaaattaaggtgagtctcacacattggaaatgggtttcacttaaagtgataggacatacactagtttcatccaataagag 7585032  T
Q  123 aatgaatgttgaa 135  Q
    ||||| |||||||    
T  7585031 aatgagtgttgaa 7585019  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 21175636 - 21175522
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||| ||| ||||||||||||||  | ||||||| |||||  ||||||||||| ||||| ||||||||||||||||| ||| |  |||||| |     
T  21175636 cactcactttattattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcatacaatgatttaacccaataaaaa 21175537  T
Q  123 aatgaatgttgaaga 137  Q
    ||| |||||||||||    
T  21175536 aataaatgttgaaga 21175522  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 10798317 - 10798416
Alignment:
Q  28 acttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatga 127  Q
    ||||||| | |||||||||||||   | ||||||| |||||| ||||  || |||| |||||||||||||||||| |||||| || ||||| ||||||||    
T  10798317 actttttaattggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtggtgggtcatacattggttttatccaatacgagaatga 10798416  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 17440254 - 17440313
Alignment:
Q  85 aaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagaatgtt 144  Q
    |||||| ||||||||||||| ||||||  |||||| |||||||||||||||| |||||||    
T  17440254 aaagtgatgggtcatacaatagtttcacccaataaaagaatgaatgttgaagggaatgtt 17440313  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 214179 - 214059
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||||||||| | ||  ||||| ||||| | ||||||  |||||| || ||| | || | |||||||||||||||| | |||||| || |||||||||    
T  214179 cactcactttttaattgatttaaaatatgatgggtctcacactttggaaagggactccatttaaagtggtgggtcatatattggttt-atccaataagag 214081  T
Q  123 aatgaatgttgaagagaatgtt 144  Q
    ||||| ||||||||||| ||||    
T  214080 aatgagtgttgaagagagtgtt 214059  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 22813322 - 22813428
Alignment:
Q  38 tggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaaga 137  Q
    |||||||||| |||  ||||||||  |||| | ||||| || |||| |||||||||||||||||| ||  ||||| |||| ||| ||||| |||| ||||    
T  22813322 tggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgttcaaga 22813421  T
Q  138 gaatgtt 144  Q
    || ||||    
T  22813422 gagtgtt 22813428  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 25010137 - 25010025
Alignment:
Q  23 cactcacttttttaatggcttaaattatgacgagtctcatgctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagag 122  Q
    |||||| ||||||| |||||||||||||   | ||||||  |||| | ||||| || || ||||| | || ||| ||||||||||||||| |||||||||    
T  25010137 cactcatttttttattggcttaaattatagtg-gtctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggtttcatccaataagag 25010039  T
Q  123 aatgaatgttgaag 136  Q
    ||||| ||||||||    
T  25010038 aatgagtgttgaag 25010025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 40125915 - 40125988
Alignment:
Q  64 ctttgggaatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaaga 137  Q
    |||||| |||||||| |||| |||||||||||||||||| | |||| || |||||| | ||| |||||| ||||    
T  40125915 ctttggaaatggattccacttaaagtggtgggtcatacattagttttatccaataaaaaaataaatgttaaaga 40125988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 21970361 - 21970425
Alignment:
Q  71 aatggatttcactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaa 135  Q
    ||||| || |||| ||||||||||| |||||| | ||||||| |||||||||| ||| |||||||    
T  21970361 aatgggttccacttaaagtggtgggacatacactagtttcattcaataagagagtgagtgttgaa 21970425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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