View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3842_low_6 (Length: 271)
Name: NF3842_low_6
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3842_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 12053852 - 12054073
Alignment:
| Q |
20 |
atataaagatgacaagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccga |
119 |
Q |
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| T |
12053852 |
atataaagatgacaagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccga |
12053951 |
T |
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| Q |
120 |
aactgccaacttttccgacttatcgtttgatcggtagtgtagttttgggggtgctatctggaatagtagcattgacaggttaaaaagttcaannnnnnnn |
219 |
Q |
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| T |
12053952 |
aactgccaacttttccaacttgtcgtttgatcggtagtgtagttctgggggtgctatctggaatagtagcattgacaggttaaaaagttcaatttttttt |
12054051 |
T |
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| Q |
220 |
atagaaatcacaactttgatcc |
241 |
Q |
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| T |
12054052 |
ttagaaatcacaactttgatcc |
12054073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 12075723 - 12075866
Alignment:
| Q |
20 |
atataaagatgacaagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccga |
119 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
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| T |
12075723 |
atataaagataacaaatgaatgactaacaattgcaatttgacagagatgtctattggttattcctgtcccaatgacactgttcaagtgccacaccgctga |
12075822 |
T |
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| Q |
120 |
aactgccaacttttccgacttatcgtttgatcggtagtgtagtt |
163 |
Q |
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| T |
12075823 |
aattaccaacttctctgacttatcatttgattggtaatgtagtt |
12075866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 12074331 - 12074510
Alignment:
| Q |
33 |
aagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccgaaactgccaacttt |
132 |
Q |
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| T |
12074331 |
aagtgaattactaacaattgcaatttgacagagatgtcttttggttattcctgtcctaatgacactgttcaagggccacaccactgaaactactaacttc |
12074430 |
T |
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| Q |
133 |
tccgacttatcgtttgatcggtagtgtagttttgggggtg-ctatctggaatagtagcattgacaggttaaaaagttcaa |
211 |
Q |
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| T |
12074431 |
tccgacttatcatttgattggtagtggagttccagtggtgagtttcttgagtagtagcattcacagtttaaaaagttcaa |
12074510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 12062654 - 12062788
Alignment:
| Q |
80 |
ttcctgtcccaatgacactgttctagtgccacacccccgaaactgccaacttttccgacttatcgtttgatcggtagtgtagttt----tgggggtgcta |
175 |
Q |
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||||||||||||||||||||||| ||||||||||| | |||||| ||||||| || |||||| ||||||| || ||||||||| ||| | || | |
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| T |
12062654 |
ttcctgtcccaatgacactgttcaagtgccacaccgctgaaactaccaacttctctaccttatcatttgatccgttgtgtagtttcaagtggtgatggtg |
12062753 |
T |
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| Q |
176 |
tctggaatagtagcattgacaggttaaaaagttcaa |
211 |
Q |
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||| |||||||||||||||||| |||||| |||||| |
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| T |
12062754 |
tct-gaatagtagcattgacagtttaaaatgttcaa |
12062788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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