View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3842_low_8 (Length: 236)

Name: NF3842_low_8
Description: NF3842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3842_low_8
NF3842_low_8
[»] chr3 (7 HSPs)
chr3 (5-133)||(27005998-27006126)
chr3 (129-236)||(33396560-33396667)
chr3 (2-138)||(36811250-36811386)
chr3 (1-120)||(36875335-36875456)
chr3 (13-50)||(51114015-51114052)
chr3 (5-98)||(37587780-37587873)
chr3 (1-45)||(37581042-37581086)
[»] chr4 (2 HSPs)
chr4 (17-53)||(55505343-55505379)
chr4 (14-48)||(1508238-1508272)
[»] chr1 (1 HSPs)
chr1 (17-58)||(43634017-43634058)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 27005998 - 27006126
Alignment:
Q  5 tttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcctcaatttcgtccccatgactgtgataggaaactcctctttgggccatg 104  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| |||    
T  27005998 tttcctggatgatattttcaaggccatcactgagaaaaattacagctccgcctcattttcgtccccgtgactgtgataggaaactcctctctgggcgatg 27006097  T
Q  105 tcttgtttgctagttattctagaagtgct 133  Q
    |||||||||||||||||||||||||||||    
T  27006098 tcttgtttgctagttattctagaagtgct 27006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 33396667 - 33396560
Alignment:
Q  129 gtgctctgttcgagttgtaagcttctttgttttcttttatgtttcagatgttatttctctttgannnnnnnnnnctttgttgaaaatgaaaactttcatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  33396667 gtgctctgttcgagttgtaagcttctttgttttcttttatgtttcagatgttatttctctttgattttttctttctttgttgaaaatgaaaactttcatt 33396568  T
Q  229 tgttatat 236  Q
    ||||||||    
T  33396567 tgttatat 33396560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 36811250 - 36811386
Alignment:
Q  2 ttgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcctcaatttcgtccccatgactgtgataggaaactcctctttgggcc 101  Q
    |||||||||||||||||||||||||||||||||||| |||| || | || || ||||| || ||||||| ||||  ||||||||||| ||||||| ||      
T  36811250 ttgtttcctggatgatattttcaaggccatcattgaaaaaagtagcggctccacctcatttccgtccccgtgacaatgataggaaacccctctttaggag 36811349  T
Q  102 atgtcttgtttgctagttattctagaagtgctctgtt 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  36811350 atgtcttgtttgctagttattctagaagtgctctgtt 36811386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36875456 - 36875335
Alignment:
Q  1 attgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcctcaatttcgtccccatgactgtgataggaa--actcctctttgg 98  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||| | |||||||| ||| |||||| |||||||||||||||  ||||||||||||    
T  36875456 attgtttcctggatgatattttcaaggccatccttgagaaaaggaacaactccgcctcatttttgtccccgtgactgtgataggaattactcctctttgg 36875357  T
Q  99 gccatgtcttgtttgctagtta 120  Q
    || |||||||||||||||||||    
T  36875356 gcgatgtcttgtttgctagtta 36875335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 51114015 - 51114052
Alignment:
Q  13 atgatattttcaaggccatcattgagaaaaataacagc 50  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  51114015 atgatattttcaaggccatcattgagagaaataacagc 51114052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 37587780 - 37587873
Alignment:
Q  5 tttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcctcaatttcgtccccatgactgtgataggaaactcctctttgg 98  Q
    |||||||||||| | |||  ||||||||||| | ||||||||| || |||||||| |||| ||| | ||||  ||| ||||||||| |||||||    
T  37587780 tttcctggatgacacttttgaggccatcatttataaaaataactgctccgcctcattttcatcctcgtgacaatgaaaggaaactcttctttgg 37587873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37581042 - 37581086
Alignment:
Q  1 attgtttcctggatgatattttcaaggccatcattgagaaaaata 45  Q
    |||||||||||||| | |||||||||||| |||||| ||||||||    
T  37581042 attgtttcctggataacattttcaaggccttcattgcgaaaaata 37581086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 55505343 - 55505379
Alignment:
Q  17 tattttcaaggccatcattgagaaaaataacagcgcc 53  Q
    ||||||||||||||||||||||||| |||||||||||    
T  55505343 tattttcaaggccatcattgagaaagataacagcgcc 55505379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 1508238 - 1508272
Alignment:
Q  14 tgatattttcaaggccatcattgagaaaaataaca 48  Q
    ||||||||||||||||||| |||||||||||||||    
T  1508238 tgatattttcaaggccatcgttgagaaaaataaca 1508272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 43634058 - 43634017
Alignment:
Q  17 tattttcaaggccatcattgagaaaaataacagcgccgcctc 58  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  43634058 tattttcaaggccatcattgagaaagataatagcgccacctc 43634017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University