View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3843_high_10 (Length: 279)

Name: NF3843_high_10
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3843_high_10
NF3843_high_10
[»] chr8 (2 HSPs)
chr8 (53-271)||(25197223-25197440)
chr8 (17-49)||(25197432-25197464)
[»] chr7 (1 HSPs)
chr7 (114-271)||(19207621-19207778)
[»] scaffold0147 (1 HSPs)
scaffold0147 (114-249)||(9949-10084)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 25197440 - 25197223
Alignment:
Q  53 aattgtgacatgattaatatgaagtgcaagggatgaaatatattttatggaaacatgaaattttggtgtaaaacataccgttttcatttttctaaggtta 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25197440 aattgtgacatgattaatatgaagtgcaagggatgaaatatattt-atggaaacatgtaattttggtgtaaaacataccgttttcatttttctaaggtta 25197342  T
Q  153 cttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatactaagcaccatgttg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25197341 cttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatattaagcaccatgttg 25197242  T
Q  253 atgtaattgcagtattatc 271  Q
    |||||||||||||| ||||    
T  25197241 atgtaattgcagtagtatc 25197223  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 25197464 - 25197432
Alignment:
Q  17 aagatgtagtacaattggattgataattgtgac 49  Q
    ||||||||||||||||| |||||||||||||||    
T  25197464 aagatgtagtacaattgtattgataattgtgac 25197432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 19207778 - 19207621
Alignment:
Q  114 tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc 213  Q
    ||||||||||||||||||||||||||  |||||||  ||||||||||| ||||||| | ||  || |||||||| ||||||||||||||||| |||||||    
T  19207778 tttggtgtaaaacataccgttttcatggttctaagtatacttgcatctggattaccatttccgcatacttcaagcacctctgcacgagcacgatcttgcc 19207679  T
Q  214 aatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc 271  Q
    |||||||||||||||| ||||| | ||||||||| | |||||||||||||||| ||||    
T  19207678 aatcttggtatttagctaacaacattaagcaccaagatgatgtaattgcagtagtatc 19207621  T

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Target: scaffold0147 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 10084 - 9949
Alignment:
Q  114 tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc 213  Q
    ||||||||||||| ||||||||||||  |||||||  || |||||||||||||| | | || |||||||||||| ||||| |||||| |||| |||||||    
T  10084 tttggtgtaaaacgtaccgttttcatgcttctaagtatatttgcatctagattatcatttccacaaacttcaagcacctccgcacgaacacgatcttgcc 9985  T
Q  214 aatcttggtatttagccaacaatactaagcaccatg 249  Q
    ||||||||||| |||| ||||| | |||||||||||    
T  9984 aatcttggtatgtagctaacaacattaagcaccatg 9949  T

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