View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3843_high_12 (Length: 275)

Name: NF3843_high_12
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3843_high_12
NF3843_high_12
[»] chr7 (1 HSPs)
chr7 (35-70)||(27255057-27255092)
[»] chr4 (5 HSPs)
chr4 (30-65)||(35305718-35305753)
chr4 (30-70)||(25597356-25597397)
chr4 (30-70)||(35307193-35307232)
chr4 (30-62)||(43631186-43631218)
chr4 (30-62)||(55536866-55536898)
[»] chr3 (2 HSPs)
chr3 (35-70)||(39506766-39506801)
chr3 (30-70)||(42596912-42596953)
[»] chr1 (1 HSPs)
chr1 (30-62)||(49914428-49914460)


Alignment Details
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 27255057 - 27255092
Alignment:
Q  35 tcattttggtgaataatattcataggggtcaaacat 70  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27255057 tcattttggtgaataatattcataggggtcagacat 27255092  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 35305753 - 35305718
Alignment:
Q  30 gtggatcattttggtgaataatattcataggggtca 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  35305753 gtgggtcattttggtgaataatattcataggggtca 35305718  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 25597356 - 25597397
Alignment:
Q  30 gtggatcattttggtgaataatattcata-ggggtcaaacat 70  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  25597356 gtgggtcattttggtgaataatattcatagggggtcaaacat 25597397  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 35307193 - 35307232
Alignment:
Q  30 gtggatcattttggtgaataatattcataggggtcaaacat 70  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  35307193 gtggatcattt-ggtgaataatattcataggggtcagacat 35307232  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 43631218 - 43631186
Alignment:
Q  30 gtggatcattttggtgaataatattcatagggg 62  Q
    |||| ||||||||||||||||||||||||||||    
T  43631218 gtgggtcattttggtgaataatattcatagggg 43631186  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 55536898 - 55536866
Alignment:
Q  30 gtggatcattttggtgaataatattcatagggg 62  Q
    |||||||||||||||||||||| ||||||||||    
T  55536898 gtggatcattttggtgaataattttcatagggg 55536866  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 39506766 - 39506801
Alignment:
Q  35 tcattttggtgaataatattcataggggtcaaacat 70  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39506766 tcattttggtgaataatattcataggggtcagacat 39506801  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 42596912 - 42596953
Alignment:
Q  30 gtggatcattttggtgaataatattcata-ggggtcaaacat 70  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  42596912 gtggattattttggtgaataatattcatagggggtcaaacat 42596953  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 49914428 - 49914460
Alignment:
Q  30 gtggatcattttggtgaataatattcatagggg 62  Q
    |||| ||||||||||||||||||||||||||||    
T  49914428 gtgggtcattttggtgaataatattcatagggg 49914460  T

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