View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3843_high_18 (Length: 232)

Name: NF3843_high_18
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3843_high_18
NF3843_high_18
[»] chr4 (1 HSPs)
chr4 (1-225)||(52187484-52187708)
[»] chr2 (4 HSPs)
chr2 (1-223)||(38989770-38989992)
chr2 (1-194)||(43866782-43866975)
chr2 (1-187)||(43863314-43863500)
chr2 (1-187)||(43874473-43874659)
[»] chr3 (12 HSPs)
chr3 (1-223)||(777410-777632)
chr3 (35-100)||(476735-476800)
chr3 (35-186)||(481668-481813)
chr3 (40-101)||(5360351-5360411)
chr3 (35-94)||(8032627-8032686)
chr3 (135-186)||(476823-476874)
chr3 (35-100)||(1304007-1304072)
chr3 (126-183)||(8032539-8032596)
chr3 (154-186)||(1205143-1205175)
chr3 (154-186)||(1303927-1303959)
chr3 (35-94)||(24104343-24104402)
chr3 (141-187)||(13490192-13490238)
[»] scaffold0438 (1 HSPs)
scaffold0438 (35-87)||(6029-6081)
[»] chr8 (3 HSPs)
chr8 (35-87)||(26291648-26291700)
chr8 (35-87)||(26304905-26304957)
chr8 (35-87)||(26338260-26338312)
[»] chr6 (7 HSPs)
chr6 (131-186)||(7174671-7174726)
chr6 (152-186)||(7114804-7114838)
chr6 (152-186)||(7119876-7119910)
chr6 (152-186)||(7123280-7123314)
chr6 (152-186)||(7117328-7117362)
chr6 (152-186)||(7129703-7129737)
chr6 (156-186)||(7140006-7140036)
[»] chr1 (1 HSPs)
chr1 (141-186)||(14288190-14288235)
[»] chr5 (2 HSPs)
chr5 (141-184)||(25070013-25070056)
chr5 (141-184)||(25127988-25128031)
[»] scaffold0525 (1 HSPs)
scaffold0525 (156-186)||(1952-1982)
[»] chr7 (1 HSPs)
chr7 (141-186)||(6889903-6889948)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 52187484 - 52187708
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187484 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 52187583  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52187584 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgagtttctgttcaaata 52187683  T
Q  201 ctatcaaggtattttatattgtacc 225  Q
    |||||||||||||||||||||||||    
T  52187684 ctatcaaggtattttatattgtacc 52187708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38989770 - 38989992
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  38989770 tccaagtcttcataactttgcttttacgggtcgctatactccaaaactttttggcagcaagagtgttctctcttccatcaaacttgtaagtgttgattta 38989869  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaata 200  Q
    ||||||  ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||    
T  38989870 agatgtcgtttgatctcggagtcgcgggagtcttcatcatttctactcaattggctggttgagctggctaatatcgaatcgttgactttttattcaaata 38989969  T
Q  201 ctatcaaggtattttatattgta 223  Q
    || || ||||| |||||||||||    
T  38989970 ctctcgaggtactttatattgta 38989992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 43866975 - 43866782
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||||||||||| |||||||||||| | ||||  |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| |||  || ||    
T  43866975 tccaagtcttcaaacctttgctttttctggtccttatactccaaaactttttgcaagcaagaatgttctctcttctatcaaacatgtaaatatccatgta 43866876  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgtt 194  Q
    |  ||||| | ||||| | |  |  |||| || ||| |  |||||||||| ||| |||||| |||| | || ||||||||||||||| ||||||    
T  43866875 acgtgttactggaactcgaaagcaagggaaacctcaccggttctactcaactggttggttgtgcttaccaacatcgaatcattgactatctgtt 43866782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 43863500 - 43863314
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||||||||||| |||||||||||| | ||||  |||||||||||||||||||  ||||||| ||||||||||||||| |||||||||  |||  || ||    
T  43863500 tccaagtcttcaaacctttgctttttctggtccttatactccaaaactttttgcaagcaagaatgttctctcttctataaaacatgtagatatccatgta 43863401  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgact 187  Q
    |  ||||| | ||||||| || |   | ||||||| ||  |||||||||| ||| ||||||| ||||||||  | ||||||||||||    
T  43863400 acgtgttactggaacttgaaggcagagcagacttcgtctgttctactcaactggttggttgaacttgctaacgttgaatcattgact 43863314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 43874659 - 43874473
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||||||||||| |||||||||||| | ||||  |||||||||||||||||||  ||||||| | ||||||||||||| |||||||||  |||  || ||    
T  43874659 tccaagtcttcaaacctttgctttttctggtccttatactccaaaactttttgcaagcaagaatcttctctcttctataaaacatgtagatatccatgta 43874560  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgact 187  Q
    |  ||||| | ||||||| || |   | | ||||| || ||||| ||||| ||| |||| ||||||||||| |||||||||||||||    
T  43874559 acgtgttactggaacttgaaggcagagcaaacttcgtcgattctgctcaactggttggtcgagcttgctaacatcgaatcattgact 43874473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 777632 - 777410
Alignment:
Q  1 tccaagtcttcatacctttgcttttacgggtcgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||| |||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||||  |||| | ||| ||||||||| ||| |||| |||||    
T  777632 tccatgtcttcataccttttcttttacgggtctttatattccaaaactttttgggagcaagagctttctttattccatcaaacatctaaatattcattta 777533  T
Q  101 agatgttatttgaacttggagtcgcgggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaata 200  Q
     | ||||||| ||||||| |||||  ||| |||||| || |||||||||||||||| |||||||||||||||||||||||| ||||  | | ||||||||    
T  777532 tggtgttattggaacttgaagtcggcggaaacttcaccacttctactcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaata 777433  T
Q  201 ctatcaaggtattttatattgta 223  Q
    || |  ||||| |||||||||||    
T  777432 ctcttgaggtactttatattgta 777410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 476735 - 476800
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  476735 tatattccaaaactttttgggagcaagagtgttatctcttctatcaaacatgtaagtattcattta 476800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 481668 - 481813
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 134  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||| |    ||||| ||     ||| ||  ||||||  |    
T  481668 tatattccaaaacttgttgggagcaagagcgttctctcttctatcaaacatgtaaatattcattcatcgcgttatatg-----gga-tcaggggagaaat 481761  T
Q  135 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||| || |||| ||||||||||| |||||||||||||||||||||||    
T  481762 catcaattatattcaactggctggttgaacttgctaatatcgaatcattgac 481813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 5360411 - 5360351
Alignment:
Q  40 tccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaa 101  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||||||    
T  5360411 tccaaaactttttgggagcaagaccgttctc-cttctatcaaacatgtaaatattgatttaa 5360351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 8032686 - 8032627
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtatt 94  Q
    |||| ||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  8032686 tatattccgaaactttttgggagcaagaccgttctctcttctatcaaacatgtaaatatt 8032627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 476823 - 476874
Alignment:
Q  135 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgac 186  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||||||||    
T  476823 catcaattctattcagctggctggttgaacttgctaatatcgaatcattgac 476874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 1304072 - 1304007
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 100  Q
    |||| ||||||| || ||||||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  1304072 tatattccaaaatttgttgggagcaagaccgttctctcttctatcaaacatctaactattcattta 1304007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 8032596 - 8032539
Alignment:
Q  126 gggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcatt 183  Q
    |||||| | ||||||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  8032596 gggagaatccatcaattctattcaactggttggttgatcttgctaatatcgaatcatt 8032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 1205143 - 1205175
Alignment:
Q  154 gctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||||    
T  1205143 gctggttgagcttgctaatatcgaatcattgac 1205175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 1303959 - 1303927
Alignment:
Q  154 gctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||||    
T  1303959 gctggttgagcttgctaatatcgaatcattgac 1303927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 24104402 - 24104343
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtatt 94  Q
    |||| |||||||| |||||| ||||||| | |||||||||||||||||||| ||| ||||    
T  24104402 tatattccaaaacattttggaagcaagactcttctctcttctatcaaacatctaaatatt 24104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 13490238 - 13490192
Alignment:
Q  141 ttctactcaattggctggttgagcttgctaatatcgaatcattgact 187  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||||||||    
T  13490238 ttctgctcaactggctagttgagcttgctaatattgaatcattgact 13490192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 6029 - 6081
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 87  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  6029 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 6081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 26291648 - 26291700
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 87  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26291648 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26291700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 26304905 - 26304957
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 87  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26304905 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 26338260 - 26338312
Alignment:
Q  35 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 87  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26338260 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 7174726 - 7174671
Alignment:
Q  131 acttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgac 186  Q
    ||||||| |||||||| ||| ||| ||||||||||||||||||| |||||||||||    
T  7174726 acttcattaattctacacaactggttggttgagcttgctaatattgaatcattgac 7174671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 7114838 - 7114804
Alignment:
Q  152 tggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||||||    
T  7114838 tggctggttgagcttgctaatatcgaatcattgac 7114804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 7119910 - 7119876
Alignment:
Q  152 tggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||||||    
T  7119910 tggctggttgagcttgctaatatcgaatcattgac 7119876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 7123314 - 7123280
Alignment:
Q  152 tggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||||||    
T  7123314 tggctggttgagcttgctaatatcgaatcattgac 7123280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 7117362 - 7117328
Alignment:
Q  152 tggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||| ||||||||||||||||    
T  7117362 tggctggttgagcttgcttatatcgaatcattgac 7117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 7129737 - 7129703
Alignment:
Q  152 tggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||| ||||||||||||||||    
T  7129737 tggctggttgagcttgcttatatcgaatcattgac 7129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Complemental strand, 7140036 - 7140006
Alignment:
Q  156 tggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||    
T  7140036 tggttgagcttgctaatatcgaatcattgac 7140006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 14288235 - 14288190
Alignment:
Q  141 ttctactcaattggctggttgagcttgctaatatcgaatcattgac 186  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||    
T  14288235 ttctattcaattggctggttgagcttggtaatattgaatcattgac 14288190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 25070013 - 25070056
Alignment:
Q  141 ttctactcaattggctggttgagcttgctaatatcgaatcattg 184  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  25070013 ttctactcaactggctggttgagattgctaatatcaaatcattg 25070056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 25127988 - 25128031
Alignment:
Q  141 ttctactcaattggctggttgagcttgctaatatcgaatcattg 184  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  25127988 ttctactcaactggctggttgagattgctaatatcaaatcattg 25128031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Complemental strand, 1982 - 1952
Alignment:
Q  156 tggttgagcttgctaatatcgaatcattgac 186  Q
    |||||||||||||||||||||||||||||||    
T  1982 tggttgagcttgctaatatcgaatcattgac 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 6889903 - 6889948
Alignment:
Q  141 ttctactcaattggctggttgagcttgctaatatcgaatcattgac 186  Q
    |||| ||||| ||||||||||| |||||||||||| ||||||||||    
T  6889903 ttcttctcaactggctggttgaacttgctaatatcaaatcattgac 6889948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University