View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3843_high_6 (Length: 351)
Name: NF3843_high_6
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3843_high_6 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 57 - 351
Target Start/End: Original strand, 50913199 - 50913500
Alignment:
| Q |
57 |
gctcccttttatagaagattaagaggatattttcttgttagaattatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttg |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50913199 |
gctcccttttatagaagattaagaggatattttcttgttagaattatcccttaattgtttgatcaagtggcacgtgtcctttctctctaaccaattgttg |
50913298 |
T |
|
| Q |
157 |
attacactttca-------tgactggactttgcttatatttggatcataacacaacattgggagtaggattgacaagcaaattcaattggctcnnnnnnn |
249 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50913299 |
attacactttgaagtttgatgactgggctttgcttatatttggatcataacacaacattaggagtaggattgacaagcaaattcaattggctcttttttt |
50913398 |
T |
|
| Q |
250 |
aagctaatatatcatgtttgtgttattgacgcataccatcagagtgtttgagctaaatttagaaggatgattaatagacaattttgtgcttttcaatcgg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
50913399 |
aagctaatatatcatgtttgtgttattgacgcataccatcagagtgtttgagctaaatttagaaggatgattaatgcacaattttgtacttttcaatcgg |
50913498 |
T |
|
| Q |
350 |
gt |
351 |
Q |
| |
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|| |
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| T |
50913499 |
gt |
50913500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 50913016 - 50913132
Alignment:
| Q |
1 |
aaaaaggtccaaaaacatgtttccaatgggttttgctttggagtgttgtaattgaagctcccttttatagaagattaagaggatattttcttgttagaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
50913016 |
aaaaaggtccaaaaacatgtttccaatgggttttgctttggagtgttgtaattgaagcttgcttttatagaagattaagaggatatttttttgttagaat |
50913115 |
T |
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| Q |
101 |
tatcccttaattgtttg |
117 |
Q |
| |
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|||||||||||| |||| |
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| T |
50913116 |
tatcccttaattatttg |
50913132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 46501732 - 46501665
Alignment:
| Q |
60 |
cccttttatagaagattaagaggatattttcttgttagaatta-tcccttaattgtttgatcaagtga |
126 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||| ||| ||| |||||| || |||||||||| |
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| T |
46501732 |
cccttttatagaagcttaagagaatattttcttgttagttttattcctttaattattggatcaagtga |
46501665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 6033482 - 6033626
Alignment:
| Q |
57 |
gctcccttttatagaagattaagaggatattttcttgttagaattatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttg |
156 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| |||||||| |||| |||| || ||| ||||||||||||| |
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| T |
6033482 |
gctcccttttatagaaggttaagaggatatttttttgtgagaattaccccttaattgttggatcaagttacacatgtctcttttctttaaccaattgttg |
6033581 |
T |
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| Q |
157 |
attacactttcatgactggactttgcttatatttggatcataaca |
201 |
Q |
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| |||||||| || | |||||||||||||||||| || ||||||| |
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| T |
6033582 |
agtacactttaataattggactttgcttatatttagaccataaca |
6033626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 37263914 - 37263770
Alignment:
| Q |
57 |
gctcccttttatagaagattaagaggatattttcttgttagaattatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttg |
156 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||| | |||||||||| ||||||||| ||||||||||| | | || || ||||||| ||||||||| |
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| T |
37263914 |
gctcccttatatagaagtttaagtggatattttcttatgagaattatcctttaattgttggatcaagtgacgcatatctcttttctctaatcaattgttg |
37263815 |
T |
|
| Q |
157 |
attacactttcatgactggactttgcttatatttggatcataaca |
201 |
Q |
| |
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|||||||||| |||| || |||||| |||||||||||||||||| |
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| T |
37263814 |
attacactttgatgattgagctttgcctatatttggatcataaca |
37263770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 36316117 - 36316248
Alignment:
| Q |
57 |
gctcccttttatagaagattaagaggatattttcttgttagaattatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttg |
156 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||||| ||||||||||||| |||| || ||||||| ||||||||| |
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| T |
36316117 |
gctcccttttatagaaggttaagcagatattttcttgtgaaaattaccccttaattgttggatcaagtgacacatgtctcttttctctaatcaattgttg |
36316216 |
T |
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| Q |
157 |
attacactttcatgactggactttgcttatat |
188 |
Q |
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|||||||||| |||| || ||||||||||| |
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| T |
36316217 |
attacactttgatgattgagttttgcttatat |
36316248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 42955046 - 42955148
Alignment:
| Q |
99 |
attatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttgattacactttcatgactggactttgcttatatttggatcata |
198 |
Q |
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|
||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||| ||| |||||| |||||| | ||||||||||||||| |||| | |
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| T |
42955046 |
attatcccttaattgttggatcaagtgacacatgtcccttttctctaaccaattgttaattccactttgatgacttggctttgcttatatttgaatcaaa |
42955145 |
T |
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| Q |
199 |
aca |
201 |
Q |
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||| |
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| T |
42955146 |
aca |
42955148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 41288716 - 41288821
Alignment:
| Q |
97 |
gaattatcccttaattgtttgatcaagtgacacgtgtcctttctctctaaccaattgttgattacactttcatgac-tggactttgcttatatttggatc |
195 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||| |||| ||||||| |||||||| ||| |||||| || || | |||| | |||||| ||||||| |
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| T |
41288716 |
gaattatcccttagcagttggatcaagtgacatatgttctttgtctctaatcaattgttaatttcactttgataactttgactctacttatacttggatc |
41288815 |
T |
|
| Q |
196 |
ataaca |
201 |
Q |
| |
|
|||||| |
|
|
| T |
41288816 |
ataaca |
41288821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 5437 - 5514
Alignment:
| Q |
59 |
tcccttttatagaagattaagaggatattttcttgttagaatta-tcccttaattgtttgatcaagtgacacgtgtcc |
135 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||| || |||||||||| || ||||| |
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| T |
5437 |
tcccttttatagaaggttaagagaatattttcttgttagttttattcccttaattattggatcaagtgatacatgtcc |
5514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 3853 - 3776
Alignment:
| Q |
59 |
tcccttttatagaagattaagaggatattttcttgttagaatta-tcccttaattgtttgatcaagtgacacgtgtcc |
135 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||| || |||||||||| || ||||| |
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|
| T |
3853 |
tcccttttatagaaggttaagagaatattttcttgttagttttattcccttaattattggatcaagtgatacatgtcc |
3776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 587159 - 587212
Alignment:
| Q |
285 |
ccatcagagtgtttgagctaaatttagaaggatgattaatagacaattttgtgc |
338 |
Q |
| |
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|||||| |||||||| ||||||||| | |||| |||||||| |||||||||||| |
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|
| T |
587159 |
ccatcaaagtgtttgtgctaaatttgggaggaagattaatatacaattttgtgc |
587212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 52724074 - 52724151
Alignment:
| Q |
59 |
tcccttttatagaagattaagaggatattttcttgttagaatta-tcccttaattgtttgatcaagtgacacgtgtcc |
135 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||| | ||| |||||||||| || |||||| |||||| ||||| |
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|
| T |
52724074 |
tcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattggatcaaatgacacatgtcc |
52724151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 29346910 - 29346978
Alignment:
| Q |
68 |
tagaagattaagaggatattttcttgttagaattat-cccttaattgtttgatcaagtgacacgtgtcc |
135 |
Q |
| |
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|||||| ||||||| |||||||||||||| |||| ||||||||| || ||||||||||||| ||||| |
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| T |
29346910 |
tagaaggttaagagattattttcttgttagttttattcccttaattattggatcaagtgacacatgtcc |
29346978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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