View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3843_high_8 (Length: 308)

Name: NF3843_high_8
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3843_high_8
NF3843_high_8
[»] chr1 (4 HSPs)
chr1 (1-307)||(2148915-2149221)
chr1 (50-306)||(2160899-2161155)
chr1 (107-216)||(41687779-41687888)
chr1 (107-221)||(19542561-19542675)
[»] chr4 (3 HSPs)
chr4 (92-219)||(2877111-2877238)
chr4 (91-201)||(2897389-2897499)
chr4 (91-216)||(2886877-2887002)
[»] chr2 (4 HSPs)
chr2 (92-228)||(44223284-44223420)
chr2 (92-228)||(44234106-44234242)
chr2 (92-228)||(44211122-44211258)
chr2 (109-216)||(43457689-43457796)
[»] chr7 (5 HSPs)
chr7 (103-222)||(42171942-42172061)
chr7 (103-267)||(42154051-42154215)
chr7 (103-221)||(42133150-42133268)
chr7 (103-227)||(42142288-42142412)
chr7 (92-249)||(39547586-39547743)
[»] chr8 (2 HSPs)
chr8 (143-216)||(4501195-4501268)
chr8 (107-180)||(43529329-43529402)
[»] chr3 (1 HSPs)
chr3 (75-180)||(49773049-49773154)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 2149221 - 2148915
Alignment:
Q  1 atcagaattaaaatcgtcctaacattttaagtctgttatgttgattatatagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149221 atcagaattaaaatcgtcctaacattttaagtctgttatgttgattatatagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaag 2149122  T
Q  101 ggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2149121 ggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctggaataaaaa 2149022  T
Q  201 ctagtggatacattgatggaaacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatattca 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149021 ctagtggatacattgaaggaaacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatattca 2148922  T
Q  301 ctcaccc 307  Q
    |||||||    
T  2148921 ctcaccc 2148915  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 2161155 - 2160899
Alignment:
Q  50 tagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtg 149  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||| | | ||| || ||||| |||||||||||||| |||||||||||||    
T  2161155 taggaaatgaaaaatcaaggagtttccgaggatcgtctcgaacttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtg 2161056  T
Q  150 taagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtggatacattgatggaaacatcaaagtatccggctatcaaaagaa 249  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||| |||||| ||||||| |||||||||||||||| | |||||||||||| ||||||    
T  2161055 taagtggtgccggaaagactactctaatggatgttttagctggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaa 2160956  T
Q  250 tcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatattcactcacc 306  Q
    ||||||| |||| |||||||||||||||||||| || ||||| ||||| || |||||    
T  2160955 tcaaaaaacatttgctcgcatatcgggatattgcgagcaatttgatatccattcacc 2160899  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 41687888 - 41687779
Alignment:
Q  107 agtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtg 206  Q
    ||||||||||| || |||||||||||||| || ||  | ||||||| |||||||||||| || ||  ||||||| ||| | ||||||||||||||| |||    
T  41687888 agtggtgctttcaggcctggagtactaacggcattagttggtgtaactggtgctggaaaaaccacactaatggatgttcttgctggaagaaaaactggtg 41687789  T
Q  207 gatacattga 216  Q
    | || |||||    
T  41687788 gttatattga 41687779  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 19542561 - 19542675
Alignment:
Q  107 agtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtg 206  Q
    |||||||||||||| |||||| |  ||||||| ||  | |||||||||||||||||||| || ||||| ||||| ||  |  | ||||| ||||||||||    
T  19542561 agtggtgcttttaggcctggaattttaacagcattagttggtgtaagtggtgctggaaaaaccactttgatggatgtgctttcaggaaggaaaactagtg 19542660  T
Q  207 gatacattgatggaa 221  Q
    | |||||||| ||||    
T  19542661 gttacattgaaggaa 19542675  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 2877111 - 2877238
Alignment:
Q  92 cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 191  Q
    ||||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| ||||| ||||| || |||||||| ||||| || || ||||    
T  2877111 cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg 2877210  T
Q  192 gaagaaaaactagtggatacattgatgg 219  Q
    | || ||||||||||| || ||||||||    
T  2877211 gtaggaaaactagtggttatattgatgg 2877238  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 2897499 - 2897389
Alignment:
Q  91 acttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagct 190  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||||| || ||||| || ||||| ||||| || |||||||||||||| ||||| |||    
T  2897499 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagctggtaaaactactttaatggatgttttggct 2897400  T
Q  191 ggaagaaaaac 201  Q
    || ||||||||    
T  2897399 ggtagaaaaac 2897389  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 2886877 - 2887002
Alignment:
Q  91 acttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagct 190  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||||| || ||||| || ||||| ||||| || |||||||||||||| ||||| |||    
T  2886877 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagctggtaaaactactttaatggatgttttggct 2886976  T
Q  191 ggaagaaaaactagtggatacattga 216  Q
    || || |||||| |||| || |||||    
T  2886977 ggtaggaaaactggtggttatattga 2887002  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 44223420 - 44223284
Alignment:
Q  92 cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 191  Q
    ||||||||||||||||||||||| || || || || || || ||||||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44223420 cttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44223321  T
Q  192 gaagaaaaactagtggatacattgatggaaacatcaa 228  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44223320 gtaggaaaacaggtggatatattgatggagacatcaa 44223284  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 44234242 - 44234106
Alignment:
Q  92 cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 191  Q
    |||||||||||||||||||| || || || ||||| ||||| || |||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44234242 cttttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44234143  T
Q  192 gaagaaaaactagtggatacattgatggaaacatcaa 228  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44234142 gtaggaaaacaggtggatatattgatggagacatcaa 44234106  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 44211258 - 44211122
Alignment:
Q  92 cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 191  Q
    ||||||||||||||||| ||||| || || || || || || ||||||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44211258 cttttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44211159  T
Q  192 gaagaaaaactagtggatacattgatggaaacatcaa 228  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44211158 gtaggaaaacaggtggatatattgatggagacatcaa 44211122  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 43457796 - 43457689
Alignment:
Q  109 tggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtgga 208  Q
    |||||| || || |||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| || ||  ||||     
T  43457796 tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggt 43457697  T
Q  209 tacattga 216  Q
    ||||||||    
T  43457696 tacattga 43457689  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 42172061 - 42171942
Alignment:
Q  103 tgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 202  Q
    ||||||||||||||||||||| ||| || |||||||  |  | ||||| ||||||||||| ||||| ||  | ||||| || ||||||||||||||||||    
T  42172061 tgttagtggtgcttttagaccaggaatattaacagcacttgtaggtgttagtggtgctgggaagacaacactcatggatgtattagctggaagaaaaact 42171962  T
Q  203 agtggatacattgatggaaa 222  Q
     ||||||||||||| |||||    
T  42171961 ggtggatacattgaaggaaa 42171942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 42154215 - 42154051
Alignment:
Q  103 tgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 202  Q
    ||||||||||||||||||||| ||| || |||||||  |  | ||||| ||||||||||||||||| ||  | ||||| || ||||| || ||||||||     
T  42154215 tgttagtggtgcttttagaccgggaatattaacagcacttgtaggtgttagtggtgctggaaagacaaccctcatggatgtattagccggcagaaaaaca 42154116  T
Q  203 agtggatacattgatggaaacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcg 267  Q
     ||||||||||||| ||||| |||||  ||||||| || | |||||| |||  | ||||||||||    
T  42154115 ggtggatacattgaaggaaatatcaacatatccggttaccgaaagaaccaagcaacattcgctcg 42154051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 42133268 - 42133150
Alignment:
Q  103 tgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 202  Q
    ||||||||||||||| ||||| ||| || |||||||  | |||||||| ||||||||||||||||| ||  | ||||| || ||||| |||||||||||     
T  42133268 tgttagtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaaca 42133169  T
Q  203 agtggatacattgatggaa 221  Q
     ||||||| ||||| ||||    
T  42133168 ggtggatatattgaaggaa 42133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 42142412 - 42142288
Alignment:
Q  103 tgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 202  Q
    |||||||||| |||||||||| ||| || |||||||  |  | ||||| ||||||||||||||||| ||  ||||||| || |||||||||||||| ||     
T  42142412 tgttagtggttcttttagaccaggaatattaacagcacttgtaggtgttagtggtgctggaaagacaaccctaatggatgtattagctggaagaaagaca 42142313  T
Q  203 agtggatacattgatggaaacatca 227  Q
     |||||||||| || ||||| ||||    
T  42142312 ggtggatacatcgaaggaaatatca 42142288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 39547743 - 39547586
Alignment:
Q  92 cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 191  Q
    |||||||||||||| ||||| ||||| |||||||| || || || ||| |||||||||| | |||||| || || || ||| | ||||| ||  |  |||    
T  39547743 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg 39547644  T
Q  192 gaagaaaaactagtggatacattgatggaaacatcaaagtatccggctatcaaaagaa 249  Q
    | ||||||||| ||||||| |||| ||| ||||||| | |||| ||||||| ||||||    
T  39547643 gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaa 39547586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 4501195 - 4501268
Alignment:
Q  143 atgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtggatacattga 216  Q
    ||||| || |||||||| || ||||| ||||||||||| |||||||| |||||||| ||| |||| ||||||||    
T  4501195 atgggagttagtggtgccgggaagacaactttaatggatgttttagcaggaagaaagactggtggctacattga 4501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 43529329 - 43529402
Alignment:
Q  107 agtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatgga 180  Q
    |||||||||||||| |||||| |  ||||||| ||  | |||||||||||||||||||| || ||||| |||||    
T  43529329 agtggtgcttttaggcctggaattttaacagcattagttggtgtaagtggtgctggaaaaaccactttgatgga 43529402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 49773049 - 49773154
Alignment:
Q  75 ctgaggatcgtctcgaacttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactacttt 174  Q
    |||| ||||| || ||||||||||  ||||||| ||| ||||||||||| ||||| || |||||| | |||||| ||||||| ||||| || || ||| |    
T  49773049 ctgaagatcgacttgaacttttgacaggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactct 49773148  T
Q  175 aatgga 180  Q
    ||||||    
T  49773149 aatgga 49773154  T

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