View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3843_low_13 (Length: 279)
Name: NF3843_low_13
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3843_low_13 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 25197440 - 25197223
Alignment:
| Q |
53 |
aattgtgacatgattaatatgaagtgcaagggatgaaatatattttatggaaacatgaaattttggtgtaaaacataccgttttcatttttctaaggtta |
152 |
Q |
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| T |
25197440 |
aattgtgacatgattaatatgaagtgcaagggatgaaatatattt-atggaaacatgtaattttggtgtaaaacataccgttttcatttttctaaggtta |
25197342 |
T |
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| Q |
153 |
cttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatactaagcaccatgttg |
252 |
Q |
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| T |
25197341 |
cttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatattaagcaccatgttg |
25197242 |
T |
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| Q |
253 |
atgtaattgcagtattatc |
271 |
Q |
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| T |
25197241 |
atgtaattgcagtagtatc |
25197223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 25197464 - 25197432
Alignment:
| Q |
17 |
aagatgtagtacaattggattgataattgtgac |
49 |
Q |
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| T |
25197464 |
aagatgtagtacaattgtattgataattgtgac |
25197432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 19207778 - 19207621
Alignment:
| Q |
114 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
213 |
Q |
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| T |
19207778 |
tttggtgtaaaacataccgttttcatggttctaagtatacttgcatctggattaccatttccgcatacttcaagcacctctgcacgagcacgatcttgcc |
19207679 |
T |
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| Q |
214 |
aatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc |
271 |
Q |
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| T |
19207678 |
aatcttggtatttagctaacaacattaagcaccaagatgatgtaattgcagtagtatc |
19207621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 10084 - 9949
Alignment:
| Q |
114 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
213 |
Q |
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| T |
10084 |
tttggtgtaaaacgtaccgttttcatgcttctaagtatatttgcatctagattatcatttccacaaacttcaagcacctccgcacgaacacgatcttgcc |
9985 |
T |
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| Q |
214 |
aatcttggtatttagccaacaatactaagcaccatg |
249 |
Q |
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| T |
9984 |
aatcttggtatgtagctaacaacattaagcaccatg |
9949 |
T |
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