View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3843_low_20 (Length: 250)
Name: NF3843_low_20
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3843_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 37244918 - 37244698
Alignment:
| Q |
18 |
ccttttctgtatcatatgtttgccacatatgagattaggaatatata--ctttttggttatttgtgtttgtccataatgacctccttgttaattatctga |
115 |
Q |
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| T |
37244918 |
ccttttctgtatcatatgtttgccacatatgagattagggatatatatactttttggttatttgtgtttgtccataatgacctccttgttaattatctga |
37244819 |
T |
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| Q |
116 |
tattatagaagtccctttttctctttttgccagcgcttttgattatagtgaagcatgtgatgagtttggttatagaactttggtattaaaatatcttaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37244818 |
tattatagaagtccctttttctctttttgccagcgcttttgattatagtgaagcatgtgatgagtttggttatagaactttggtattaaaatatcttaga |
37244719 |
T |
|
| Q |
216 |
gtcttagagaccactaacccc |
236 |
Q |
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||||||||||||||| ||||| |
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| T |
37244718 |
gtcttagagaccactgacccc |
37244698 |
T |
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