View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3843_low_3 (Length: 474)

Name: NF3843_low_3
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3843_low_3
NF3843_low_3
[»] chr6 (31 HSPs)
chr6 (80-462)||(4601468-4601850)
chr6 (396-460)||(4505852-4505916)
chr6 (396-460)||(4480688-4480752)
chr6 (20-83)||(4600924-4600987)
chr6 (399-461)||(4617020-4617082)
chr6 (396-460)||(3171736-3171800)
chr6 (397-461)||(4299812-4299876)
chr6 (396-460)||(4492950-4493014)
chr6 (401-457)||(4560506-4560562)
chr6 (404-460)||(4267239-4267295)
chr6 (396-460)||(4504470-4504534)
chr6 (401-457)||(4563711-4563767)
chr6 (401-460)||(4557125-4557184)
chr6 (401-460)||(4570972-4571031)
chr6 (398-452)||(4515202-4515256)
chr6 (396-461)||(4516316-4516381)
chr6 (396-452)||(4461118-4461174)
chr6 (401-457)||(4574308-4574364)
chr6 (401-461)||(4606963-4607023)
chr6 (404-460)||(4622145-4622201)
chr6 (399-460)||(4392099-4392160)
chr6 (401-454)||(4579432-4579485)
chr6 (259-344)||(4616929-4617014)
chr6 (401-457)||(4585636-4585692)
chr6 (401-457)||(4592231-4592287)
chr6 (405-457)||(4598175-4598227)
chr6 (162-258)||(4616379-4616477)
chr6 (404-445)||(4256700-4256741)
chr6 (407-460)||(4490428-4490481)
chr6 (401-457)||(4613794-4613850)
chr6 (396-460)||(4625946-4626010)
[»] chr5 (3 HSPs)
chr5 (142-345)||(28000449-28000653)
chr5 (394-461)||(28000171-28000238)
chr5 (404-460)||(24103002-24103058)
[»] chr8 (3 HSPs)
chr8 (395-461)||(1674220-1674286)
chr8 (401-453)||(20863923-20863975)
chr8 (401-460)||(16686340-16686399)
[»] scaffold0288 (1 HSPs)
scaffold0288 (404-461)||(3791-3848)
[»] chr3 (1 HSPs)
chr3 (367-460)||(1281082-1281173)
[»] chr7 (1 HSPs)
chr7 (407-460)||(3086426-3086479)
[»] scaffold0477 (1 HSPs)
scaffold0477 (404-460)||(4759-4815)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 80 - 462
Target Start/End: Original strand, 4601468 - 4601850
Alignment:
Q  80 ttttttaaccagtgccctgaagacattggttagtttgtgatcaatctgtatcacatacatggtaatgagttggttaagctatagtaactgtgaaaggaaa 179  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||    
T  4601468 ttttttaaccagtgccctggagacactggttagtttgtgatcaatctgtatcacatgcatgg----gagttggttaagctatagtaactgtgaaaggaaa 4601563  T
Q  180 cttattccaaacttcaattaataaagtttctttctaatcatccctaggaaaaatatttgaagcttcacataatattaatcccaaattgaatattggaata 279  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4601564 cttattccaaacttcaattaataaagtttctttctaatcagccctaggaaaaatatttgaagcttcacataatattaatcccaaattcaatattggaata 4601663  T
Q  280 gtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataat----ttagaaacaacctccaggtcgataaagtagtagaatactgcattgt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4601664 gtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataatttaattagaaacaacctccaggtcgataaagtaatagaatactgcattgt 4601763  T
Q  376 ataaaataatatcattatatatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccaccta 462  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4601764 ataaaacaatatcattatatatctaattttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccaccta 4601850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 4505852 - 4505916
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4505852 atctaattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccacc 4505916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 4480688 - 4480752
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  4480688 atctaattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccacc 4480752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 4600924 - 4600987
Alignment:
Q  20 agccctccattctcttcacttgtatatgctttcacctcattcgggctgtattttatgtcctttt 83  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4600924 agccttccattctcttcacttgtatatgctttcacgtcattcggggtgtattttatgtcctttt 4600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 4617020 - 4617082
Alignment:
Q  399 taattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  4617020 taattttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacct 4617082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 3171736 - 3171800
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||    
T  3171736 atctaatattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccacc 3171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 461
Target Start/End: Complemental strand, 4299876 - 4299812
Alignment:
Q  397 tctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||| |||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||    
T  4299876 tctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacct 4299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 4492950 - 4493014
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||||||||||| || ||||| || |||||||||| |||||||||||||||||||||    
T  4492950 atctaattttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccacc 4493014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 4560506 - 4560562
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  4560506 attttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacc 4560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 4267295 - 4267239
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccacc 4267239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 4504534 - 4504470
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||| || ||||||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  4504534 atctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccacc 4504470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 4563711 - 4563767
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||    
T  4563711 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 4563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 4557125 - 4557184
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||||    
T  4557125 attttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccacc 4557184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 4570972 - 4571031
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||| ||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||    
T  4570972 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 4571031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 4515256 - 4515202
Alignment:
Q  398 ctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaa 452  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||| |||||||    
T  4515256 ctaattttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 4516316 - 4516381
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||||||||||| |||| |||||||||||| ||||| |||| |||||  |||||||||||||||    
T  4516316 atctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacct 4516381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 4461118 - 4461174
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaa 452  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||| ||||||||    
T  4461118 atctaattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaa 4461174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 4574308 - 4574364
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||||||||||||||||||||||||| ||||| |||| |||  |||||||||||||    
T  4574308 attttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacc 4574364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 4607023 - 4606963
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    ||||||||||||||| |||| |||||| ||||| |||| ||||||||||||| ||||||||    
T  4607023 attttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacct 4606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 4622145 - 4622201
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||  |||||||||||||||||||||| |||  ||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccacc 4622201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 4392160 - 4392099
Alignment:
Q  399 taattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||| ||||||||||| ||||||||||| | |||||||| ||||||| ||||| |||||||    
T  4392160 taattatgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccacc 4392099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 4579432 - 4579485
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaaca 454  Q
    ||||||||| || |||||||||||||| ||||| |||| |||||||||||||||    
T  4579432 attttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaaca 4579485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 4616929 - 4617014
Alignment:
Q  259 cccaaattgaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataatttagaaacaacctcc 344  Q
    |||||||| ||||||| || | |||||||| ||||||||| | ||||||||||||||||| || ||| ||||| || || ||||||    
T  4616929 cccaaattaaatattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatggcctaaaaatttcgatacgacctcc 4617014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 4585636 - 4585692
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||| ||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||    
T  4585636 attttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacc 4585692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 4592231 - 4592287
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||| |||||||||||||||||| || | |||||||| |||||| |||||||||||    
T  4592231 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 4592287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 4598175 - 4598227
Alignment:
Q  405 tgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    |||||||| |||||||||||||| ||||| || | ||||||||||||||||||    
T  4598175 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacc 4598227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 4616379 - 4616477
Alignment:
Q  162 agtaactgtgaaaggaaacttattccaaacttcaatta-ataaagtttctttctaatcatccc-taggaaaaatatttgaagcttcacataatattaat 258  Q
    ||||| |||| |||||  ||| |||||||||||||||| || ||||||| | |||||||  |  ||| ||||||||||||||||||||||||| |||||    
T  4616379 agtaattgtggaaggagccttgttccaaacttcaattatatgaagtttcatcctaatcaggctgtagaaaaaatatttgaagcttcacataatgttaat 4616477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 4256741 - 4256700
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcat 445  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  4256741 ttgtttaagcatgacctccttaataactttgtccaagttcat 4256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 4490481 - 4490428
Alignment:
Q  407 tttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||||  || |||||||| |||||||||| |||||||||||||| ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccacc 4490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 4613850 - 4613794
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 457  Q
    ||||||||| |||| |||||| || || |||||||||| |||||| |||||||||||    
T  4613850 attttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacc 4613794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 4625946 - 4626010
Alignment:
Q  396 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||| |||||||||||| || || ||||| | ||| ||||  ||||||||||||||||||||    
T  4625946 atctaatattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccacc 4626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 142 - 345
Target Start/End: Complemental strand, 28000653 - 28000449
Alignment:
Q  142 taatgagttggttaagctatagtaactgtgaaaggaaacttattccaaacttcaatta-ataaagtttctttctaatca-tccct-aggaaaaatatttg 238  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||| ||  |||  ||||  |||||||||||||    
T  28000653 taatgtgttggttaagctatagtaactatgaaaggaaccttattccaaacttcaattatataaattttcttgctggtcagaccctctggaaaaatatttg 28000554  T
Q  239 aagcttcacataatattaatcccaaattgaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataatttagaaaca 338  Q
    || |||||| |||| ||||||||||||||||| ||  | ||||||  |||| || |||   ||||||||||| |||||||||||||| ||||||||||||    
T  28000553 aaacttcacgtaatgttaatcccaaattgaatttttaagtagtac--agtacaatatatggtgcatcaaagcgtagtaatagcttaaaaatttagaaaca 28000456  T
Q  339 acctcca 345  Q
    |||||||    
T  28000455 acctcca 28000449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 28000238 - 28000171
Alignment:
Q  394 atatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  28000238 atatctaattttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacct 28000171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 24103002 - 24103058
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccacc 24103058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 1674220 - 1674286
Alignment:
Q  395 tatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  1674220 tatctaattttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacct 1674286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 20863975 - 20863923
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaac 453  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  20863975 attttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaac 20863923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 16686399 - 16686340
Alignment:
Q  401 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||||||||||| |||||| |||| ||||| |||| |||||||||||||||||||||    
T  16686399 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 16686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 3848 - 3791
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 461  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacct 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 460
Target Start/End: Original strand, 1281082 - 1281173
Alignment:
Q  367 ctgcattgtataaaataatatcattatatatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||| | |||| ||||||||| |||  ||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||||    
T  1281082 ctgcattgcagaaaacaatatcattctat--ctaattttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacc 1281173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  407 tttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 4815 - 4759
Alignment:
Q  404 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 460  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||||| |||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacc 4759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University