View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3843_low_6 (Length: 422)
Name: NF3843_low_6
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3843_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 39740160 - 39739869
Alignment:
| Q |
10 |
attatactaatgcagatcttatataaaagaacaacaatttgtaaaagnnnnnnnnngctcttatattttgggactgtcaaaatatataagaaacagtgaa |
109 |
Q |
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| T |
39740160 |
attatactaatgcagatcttatataaaagaacaacaatttgtaaaagaaaaaaaaagttcttatattttgggacggtcaaaatatataagaaacagtgaa |
39740061 |
T |
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| Q |
110 |
aataattacctatttaaaaattaattagacttaaatggcaatagatgcacgaaatgataataatgatcgaaaactcacacatacaattg---aagt---- |
202 |
Q |
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| T |
39740060 |
aataattacctatttaaaaattaattagacttaaatggcaatagatggacgaaatgataatagtgatcgaaaactcacacatacagttgaataagtcggg |
39739961 |
T |
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| Q |
203 |
------tcccgagttggctcagtaattttaacaattttgttggttgagttagaacttatggactatataacaatcaacaaagcatgtcaatc |
288 |
Q |
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| T |
39739960 |
ttcgaatcccgggttgactcagtaattttaacaattttgttggttgagttagaactcatggactatacaacaatcaacaaagcatgtcaatc |
39739869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 39739805 - 39739753
Alignment:
| Q |
351 |
gttatataatgtaatagctctggaatctgatctaattttagaggtcttcatgt |
403 |
Q |
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| T |
39739805 |
gttatataatgtaatagctctggaatctgatctaattttagaggtcttcatgt |
39739753 |
T |
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