View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3843_low_7 (Length: 415)
Name: NF3843_low_7
Description: NF3843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3843_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 77 - 405
Target Start/End: Original strand, 9123100 - 9123426
Alignment:
| Q |
77 |
agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg |
176 |
Q |
| |
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||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9123100 |
agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg |
9123199 |
T |
|
| Q |
177 |
acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
276 |
Q |
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| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123200 |
a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
9123297 |
T |
|
| Q |
277 |
ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
376 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123298 |
ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
9123397 |
T |
|
| Q |
377 |
atcttgcaatgaatgaccacacaggttct |
405 |
Q |
| |
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|||||||||||||||||| ||||| |||| |
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| T |
9123398 |
atcttgcaatgaatgaccgcacagattct |
9123426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 77 - 405
Target Start/End: Original strand, 9131207 - 9131533
Alignment:
| Q |
77 |
agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg |
176 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9131207 |
agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg |
9131306 |
T |
|
| Q |
177 |
acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
276 |
Q |
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| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131307 |
a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
9131404 |
T |
|
| Q |
277 |
ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
376 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131405 |
ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
9131504 |
T |
|
| Q |
377 |
atcttgcaatgaatgaccacacaggttct |
405 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |
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| T |
9131505 |
atcttgcaatgaatgaccgcacagattct |
9131533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 110 - 405
Target Start/End: Original strand, 24524997 - 24525294
Alignment:
| Q |
110 |
aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatgacagttccttcctat---aatacatgcattaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
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| T |
24524997 |
aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatga-agttccttcctatgataatacatgcattgta |
24525095 |
T |
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| Q |
207 |
atcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaat |
306 |
Q |
| |
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|| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
24525096 |
attagctacaatcattcctaaagataaaaagctaattaatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaat |
24525195 |
T |
|
| Q |
307 |
ctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
405 |
Q |
| |
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| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
24525196 |
cattcactcccataatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
24525294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 24524921 - 24524967
Alignment:
| Q |
15 |
agtaactgataattgaccatctatatagtatgagttgcagtgacttgatat |
65 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
24524921 |
agtaactgataattgaccatctat----tatgagttgcagtgacttcatat |
24524967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 9039096 - 9038960
Alignment:
| Q |
213 |
tgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaa |
312 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
9039096 |
tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat-tctgttaagaaatttctcctcgttcaaatctgtca |
9038998 |
T |
|
| Q |
313 |
ctcccattatctcatcctttagaaccaaccctacaaat |
350 |
Q |
| |
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||||||| ||||||||||||| ||||||||| |||||| |
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| T |
9038997 |
ctcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
| Q |
230 |
ataaaaagctaattaatcgagaatgataatttctccttcttc |
271 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39815150 |
ataaaaagctaattaatcgagaatgataacttctccttcttc |
39815109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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