View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3844_low_1 (Length: 394)
Name: NF3844_low_1
Description: NF3844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3844_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 96 - 381
Target Start/End: Original strand, 32303566 - 32303851
Alignment:
| Q |
96 |
cgacatcggacatgtgcatgaaagtggcgacgacgggttccgatcgtgaatcggtggtgacggcgggtttccgaccgggaatcggcgacgacggcggcgt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||| |
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| T |
32303566 |
cgacatcggacatgtgcatgaaagtggcgacgacgggttccgatcgtgaatcggtggtgaaggcgggtttccgaccgagaatcggtggcgacggcggcgt |
32303665 |
T |
|
| Q |
196 |
tgagctggggagggttgggttcgctaaggaggggaaggagaaacaacatccttgaaggaagaagaagagttaaagcacatcacttaatgttgagattatt |
295 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
32303666 |
tgagctagggagggttgggttcgctaaggaggggaaggagaaacaacagccttgaaggaagaagaagagttaaagcacagcacgtgatgttgagattatt |
32303765 |
T |
|
| Q |
296 |
aggagaaataatagaataagaagagaaacatgtgttgttgtatgagtcatattaatctcaaccatctatttaatatccaagggcct |
381 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
32303766 |
aggagaaatattagaataagaagagaaacatgtgttgttgtatgagtccttttaatctcaaccatctatttaatatccaagggcct |
32303851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 122 - 383
Target Start/End: Complemental strand, 22980314 - 22980068
Alignment:
| Q |
122 |
gcgacgacgggttccgatcgtgaatcggtggtgacggcgggtttccgaccgggaatcggcgacgacggcggcgttgagctggggagggttgggttcgcta |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||| |
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| T |
22980314 |
gcgacgacgggttccaatcgtgaatcggtggtgacggcaggtttccgaccgggaatcggtggcgacggcggcgttgagcatgggagggttgagttcgcta |
22980215 |
T |
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| Q |
222 |
aggaggggaaggagaaacaacatccttgaaggaagaagaagagttaaagcacatcacttaatgttgagattattaggagaaataatagaataagaagaga |
321 |
Q |
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| T |
22980214 |
aggaggggaaggagaaacaac--------------aagaagagtcaaagcacaacacgtgatgtt-atattattaggagaaataatagaataagaagaga |
22980130 |
T |
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| Q |
322 |
aacatgtgttgttgtatgagtcatattaatctcaaccatctatttaatatccaagggcctat |
383 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22980129 |
aacatatgttgttgtatgagtcattttaatctcaaccatctatttaatatccaagggcctat |
22980068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 7565184 - 7565291
Alignment:
| Q |
161 |
ggtttccgaccgggaatcggcgacgacggcggcgttgagctggggagggttgggttc--gctaaggaggggaaggagaaacaacatccttgaaggaagaa |
258 |
Q |
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||||||||||| |||||||| | |||||||||| |||||| ||||| ||||||||| | ||||| | ||| |||||||||| |||||||||||||| |
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| T |
7565184 |
ggtttccgaccaggaatcggtggcgacggcggctttgagccagggagagttgggttcatgtgaaggaag--aagaagaaacaacaaccttgaaggaagaa |
7565281 |
T |
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| Q |
259 |
gaagagttaa |
268 |
Q |
| |
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|||||||||| |
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| T |
7565282 |
gaagagttaa |
7565291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 22980620 - 22980591
Alignment:
| Q |
96 |
cgacatcggacatgtgcatgaaagtggcga |
125 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22980620 |
cgacatcggacatgtgcatgaaagtggcga |
22980591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 36780655 - 36780797
Alignment:
| Q |
96 |
cgacatcggacatgtgcatgaaagtggcgacgacgggttccgatcgtgaatcggtggtgacggcgggtttccgaccgggaatcggcgacgacggcggcgt |
195 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
36780655 |
cgacatcggacatgtgcatgaaagtggcgacgacgggttccgatcgtgaatcggtggtgacggcgggtttctgaccgggaatcggtggcgatggcggcgt |
36780754 |
T |
|
| Q |
196 |
tgagctggggagggttgggttcgctaaggaggggaaggagaaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36780755 |
tgagctggggagggttgggttcgctaaggaggggaaggagaaa |
36780797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 36780790 - 36780877
Alignment:
| Q |
296 |
aggagaaataatagaataagaagagaaacatgtgttgttgtatgagtcatattaatctcaaccatctatttaatatccaagggcctat |
383 |
Q |
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| T |
36780790 |
aggagaaataatagaataagaagagaaacatgtgttgttgtatgagtcattttaatctcaaccatctatttaatatccaagggcctat |
36780877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 383
Target Start/End: Original strand, 38048117 - 38048393
Alignment:
| Q |
98 |
acatcggacatgtgcatgaaagtggcgacgacgggttccgatcgtgaatcggtggtgacggcgggtttccgaccgggaatcggcgacgacggcggcgttg |
197 |
Q |
| |
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|||||||||| ||| | |||||| |||||| |||||||||| | || ||||||||||||| || ||||||||||||||||| | ||||| ||| ||| |
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| T |
38048117 |
acatcggacaggtgaaggaaagttgcgacggcgggttccgaccacaaa-cggtggtgacggcaggattccgaccgggaatcggtgg-gacggaggctttg |
38048214 |
T |
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| Q |
198 |
agctggggagggttgggttcgctaaggaggggaaggagaaacaacatccttgaaggaagaagaagagttaaagcacatcacttaatgttgagattattag |
297 |
Q |
| |
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||| ||||| ||||||| ||||||||||||||||| ||||||| | |||||||||||| |||||||| | |||| | | ||||| ||||| | |
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| T |
38048215 |
agccggggatggttggggtcgctaaggaggggaagaagaaacagtagccttgaaggaagtagaagagtcgacgcacgtga-----tgttgggattagga- |
38048308 |
T |
|
| Q |
298 |
gagaaataatagaataagaagagaaacatgtgttgttgtatgagtcatattaatctcaaccatctatttaatatccaagggcctat |
383 |
Q |
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| |||||||||| |||||||||| |||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38048309 |
-aaaaataatagagtaagaagagatacatttgttgctttatgagtcattttaatctcaaccatctatttaatatccaagggcctat |
38048393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 9956194 - 9956109
Alignment:
| Q |
293 |
attaggagaaataatagaataagaagagaaacatgtgttgttgtatgagtcatattaatctcaaccatctatttaatatccaaggg |
378 |
Q |
| |
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|||| ||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||| ||||||||| ||||| ||||| |
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| T |
9956194 |
attatgagaaataatagagtaaggggagaaacatgtgttgttgtatgagttgttttaatctcagccatctattatatatcgaaggg |
9956109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 9956278 - 9956218
Alignment:
| Q |
204 |
ggagggttgggttcgctaaggaggggaaggagaaacaacatccttgaaggaagaagaagag |
264 |
Q |
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||||||||||||||| |||||||||||| |||| | || |||||||||||||||||||| |
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| T |
9956278 |
ggagggttgggttcgacaaggaggggaagaagaagcggcagccttgaaggaagaagaagag |
9956218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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