View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3844_low_3 (Length: 238)
Name: NF3844_low_3
Description: NF3844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3844_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12878954 - 12878734
Alignment:
| Q |
1 |
ttgtccagcctcttgaagaccttctaacacaccccaaaactcagccatataagcactacaacttcccacatacttgaaatatccacaaatacactcatca |
100 |
Q |
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| T |
12878954 |
ttgtccatccacttgaagaccttctaacacaccccaaaactcagccatataagcactaaaacttcccacatacttgaaatatccacaaatacactcatca |
12878855 |
T |
|
| Q |
101 |
ttccaaaatatatgctccacccaaccatgtgtccatgctttaaaattcatacgatgtttggccataatttcatcaagttacaccacaaatcattggcctg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12878854 |
ttccaaaatatatgctccacccaaccatgtttccatgctttaaaattcatacgatgtttggccataatttcatcaagttacaccacaaatcattggcctg |
12878755 |
T |
|
| Q |
201 |
atcacaaagaaaccaacatac |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
12878754 |
atcacaaataaaccaacatac |
12878734 |
T |
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