View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_high_10 (Length: 352)
Name: NF3845_high_10
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 40892671 - 40892347
Alignment:
| Q |
19 |
gaaacacaaatttgagagcacaacaaaccctaattgggttgaacttccaaaagatataacatcaaacat--------ggcttaataccgtcgaaattcta |
110 |
Q |
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| T |
40892671 |
gaaacacaaatttgagagcacaaaaaaccctaattgggttgaacttccaaaagatataacatcaaacatacttcaaaggcttaatacagtcgaaattcta |
40892572 |
T |
|
| Q |
111 |
acaaaaacacgctatgtgtgtccttattggtggaacatttgcaaagatcctttcatgtggtgcgagattaacattggaacttttctttcttatctgatga |
210 |
Q |
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| T |
40892571 |
acaaaaacacgctatgtgtgtccttattggtggaacatttgcaaagatcctttcatgtggtgcgagattaacatgggaacttttctttcttatctgatga |
40892472 |
T |
|
| Q |
211 |
tcatgggactcataatcttgattgtttggttaacctttgtcaatacgctgttgatctaagttctggccatttagnnnnnnntgatatttattgttttgcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40892471 |
tcatgggactcataatcttgattgtttggttaacctttgtcagtacgctgttgatctaagttctggccatttagaaaaaaatgatatttattgttttgcc |
40892372 |
T |
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| Q |
311 |
acggatgatcttctccaatacattg |
335 |
Q |
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|| |||||||||||||||||||||| |
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| T |
40892371 |
accgatgatcttctccaatacattg |
40892347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 335
Target Start/End: Original strand, 38284397 - 38284710
Alignment:
| Q |
37 |
cacaacaaaccctaattgggttgaacttccaaaagatataacatcaaacat--------ggcttaataccgtcgaaattctaacaaaaacacgctatgtg |
128 |
Q |
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| T |
38284397 |
cacaacaaaccctaattggcttgaacttcccaaagacttaacatcaaacattctcaaaaggctcggtgctgttgaaattcttacaaatgcacgcaatgtg |
38284496 |
T |
|
| Q |
129 |
tgtccttattggtggaacatttgcaaagatcctttcatgtggtgcgagattaacattggaacttttc----tttctt---atctgatgatcatgggactc |
221 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| | || ||| | || |||||||||| || ||| || || | || || ||| |
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| T |
38284497 |
tgtccgtattggtggaacatttgcaaagatcctttcatgtggcgtgaaattcaaatgggaacttttcatctttactttcaatatgctaatgctgatgctc |
38284596 |
T |
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| Q |
222 |
ataatcttgattgtttggttaacctttgtcaatacgctgttgatctaagttctggccatttagnnnnnnntgatatttattgttttgccacggatgatct |
321 |
Q |
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| T |
38284597 |
ctgatcttgattatttggtcaagctttgtcaatatgctgttgatctaagttctggtcatttagaaaaaattgatatttatagatttggttctgatcatct |
38284696 |
T |
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| Q |
322 |
tctccaatacattg |
335 |
Q |
| |
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|||||||||||||| |
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| T |
38284697 |
tctccaatacattg |
38284710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 30624154 - 30624070
Alignment:
| Q |
105 |
attctaacaaaaacacgctatgtgtgtccttattggtggaacatttgcaaagatcctttcatgtggtgcgagattaacattggaa |
189 |
Q |
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||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||| |||| |
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| T |
30624154 |
attctcacaaaggcacgctatgtgtgtccttattggtggaatatttgcaaagatcctttcatgtggcgcaagattcacatgggaa |
30624070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 30223120 - 30223172
Alignment:
| Q |
118 |
cacgctatgtgtgtccttattggtggaacatttgcaaagatcctttcatgtgg |
170 |
Q |
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| T |
30223120 |
cacgcaatgtgtgtccttattggtggaacatttgcaaggatcctctcatgtgg |
30223172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 30624018 - 30623917
Alignment:
| Q |
234 |
gtttggttaacctttgtcaatacgctgttgatctaagttctggccatttagnnnnnnntgatatttattgttttgccacggatgatcttctccaatacat |
333 |
Q |
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||||||| || ||||||||||| |||||||| ||||||||||| ||||||| |||||| ||| | |||| || |||||||||||||||||||| |
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| T |
30624018 |
gtttggtcaatctttgtcaatatgctgttgacctaagttctggtcatttagaaaagattgatatctatggatttggtactgatgatcttctccaatacat |
30623919 |
T |
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| Q |
334 |
tg |
335 |
Q |
| |
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|| |
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| T |
30623918 |
tg |
30623917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 30230342 - 30230413
Alignment:
| Q |
99 |
gtcgaaattctaacaaaaacacgctatgtgtgtccttattggtggaacatttgcaaagatcctttcatgtgg |
170 |
Q |
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| T |
30230342 |
gtcgaaattttgacaaatgcacgcaatgtgtgtccttattggtggagcatttgcaaggatcctcgcatgtgg |
30230413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 29721122 - 29721155
Alignment:
| Q |
124 |
atgtgtgtccttattggtggaacatttgcaaaga |
157 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29721122 |
atgtgtgtccttattggtggaacatttgcaaaga |
29721155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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