View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3845_high_12 (Length: 343)

Name: NF3845_high_12
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3845_high_12
NF3845_high_12
[»] chr7 (2 HSPs)
chr7 (1-333)||(14051942-14052274)
chr7 (1-333)||(14361970-14362302)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 14051942 - 14052274
Alignment:
Q  1 cctggtaccagaatacgcaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactggaaaacacaat 100  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||    
T  14051942 cctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactggaaaacacgat 14052041  T
Q  101 atcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgagaatcttgaagggaagttcttagaatcagaggcagagaaat 200  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14052042 atcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgagaatcttgaagggaagttcttagaatcagaggcagagaaat 14052141  T
Q  201 tggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatggtaagcacttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14052142 tggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatggtaagcacttca 14052241  T
Q  301 tgacaagaagagtgatattttagtttgcctttg 333  Q
    ||||||||||| |||||||||||||||||||||    
T  14052242 tgacaagaagaatgatattttagtttgcctttg 14052274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 14361970 - 14362302
Alignment:
Q  1 cctggtaccagaatacgcaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactggaaaacacaat 100  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||    
T  14361970 cctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactggaaaacacgat 14362069  T
Q  101 atcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgagaatcttgaagggaagttcttagaatcagaggcagagaaat 200  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14362070 atcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgagaatcttgaagggaagttcttagaatcagaggcagagaaat 14362169  T
Q  201 tggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatggtaagcacttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14362170 tggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatggtaagcacttca 14362269  T
Q  301 tgacaagaagagtgatattttagtttgcctttg 333  Q
    ||||||||||| |||||||||||||||||||||    
T  14362270 tgacaagaagaatgatattttagtttgcctttg 14362302  T

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