View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_high_13 (Length: 337)
Name: NF3845_high_13
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 3916729 - 3916409
Alignment:
| Q |
1 |
ggatcacaccatatttctattcattcattagttattctatcctttaacttaattactttctatttattccttatgtaactaaaaactgctcaaccttaaa |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||||||||| |
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| T |
3916729 |
ggatcacactgtatttctattcattcattagttattctatcctttaacataattactttctatttattcctcatgtaacaaaaagcatgtcaaccttaaa |
3916630 |
T |
|
| Q |
101 |
caacataagtaaaaggaaactatgatccttaat-ctttaaaaccatggttgcaacttgcaacacgtttttcagctacctt-aattaacttttgctaatat |
198 |
Q |
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|
|||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| || |||||| |||| ||| || |
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| T |
3916629 |
caacataagtaaaaggaaactaaaatccttaatactttaaaaccatggtttcatcttgcaacacgtttttcagctactttcaattaagctttgttaaaat |
3916530 |
T |
|
| Q |
199 |
caatttcctcaagataaggtaaatttaattcacttccattgtaagaaatcaatagttctcatcactctagccttaagttctataaattggagtgattttg |
298 |
Q |
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||||||||| | ||||| |||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3916529 |
caatttccttacgataatgtaattttaattcacttctattttaggaaatcaatagttctcatcactctagccttaagttctataaattggagtgattttg |
3916430 |
T |
|
| Q |
299 |
gagacagtttattcatacaaa |
319 |
Q |
| |
|
|||| | |||||||||||||| |
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| T |
3916429 |
gagaaaatttattcatacaaa |
3916409 |
T |
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