View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3845_high_16 (Length: 251)
Name: NF3845_high_16
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14051967 - 14051732
Alignment:
| Q |
1 |
cggttgttgtgtattctggtgccaggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14051967 |
cggttgttgtgtattctggtgccaggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatc |
14051868 |
T |
|
| Q |
101 |
tgcaagcaaggatttgtatcgagaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14051867 |
tgcaagcaaggatttgtatcgagaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataa |
14051768 |
T |
|
| Q |
201 |
gaaatacctgaacaagacacaatcacataatatgtt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14051767 |
aaaatacctgaacaagacacaatcacataatatgtt |
14051732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14361995 - 14361761
Alignment:
| Q |
1 |
cggttgttgtgtattctggtgccaggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14361995 |
cggttgttgtgtattctggtgccaggtaccccatagcagcactagctttgagg-tggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatc |
14361897 |
T |
|
| Q |
101 |
tgcaagcaaggatttgtatcgagaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14361896 |
tgcaagcaaggatttgtatcgagaatcgagaagtactttttcagccgatatactctgatgaactaganaatgcttccttcctttctttccatgcagataa |
14361797 |
T |
|
| Q |
201 |
gaaatacctgaacaagacacaatcacataatatgtt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14361796 |
aaaatacctgaacaagacacaatcacataatatgtt |
14361761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University