View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_high_18 (Length: 249)
Name: NF3845_high_18
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4865219 - 4865344
Alignment:
| Q |
1 |
cgactacatcaccattttcatattttaaactctcactctcattaagtgaaagagctggtcatgtaaatgaaagaggggtaaaatttcccatacatcattg |
100 |
Q |
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| T |
4865219 |
cgactacatcaccattatcatattttaaactctcactctcattaagtgaaagagctggtcctgtaaatgaaatagaggtaaaatttcccatacatcattg |
4865318 |
T |
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| Q |
101 |
gagtatgtaatttttattaagaaagc |
126 |
Q |
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| T |
4865319 |
gagtatgtaatttttattaagaaagc |
4865344 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 4865344 - 4865431
Alignment:
| Q |
160 |
cagatgagaaagagggcacataacatcactaaagacagttag--------gcaagttatctcttaattaggaaagatttcattttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4865344 |
cagatgagaaagagggcacataacatcactaaagacagttagcttggagcgcaagttatctcttaattaggaaagatttcattttcat |
4865431 |
T |
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