View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3845_high_29 (Length: 215)

Name: NF3845_high_29
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3845_high_29
NF3845_high_29
[»] chr4 (22 HSPs)
chr4 (15-215)||(27444618-27444818)
chr4 (82-212)||(27431039-27431169)
chr4 (144-213)||(27554427-27554496)
chr4 (153-213)||(27526074-27526134)
chr4 (153-215)||(27474008-27474070)
chr4 (161-215)||(27480017-27480071)
chr4 (153-215)||(27513738-27513800)
chr4 (155-215)||(27498531-27498591)
chr4 (153-215)||(27466937-27466999)
chr4 (161-215)||(27487099-27487153)
chr4 (161-215)||(27523373-27523427)
chr4 (90-215)||(27557605-27557727)
chr4 (112-213)||(27501435-27501536)
chr4 (169-215)||(27460594-27460640)
chr4 (161-215)||(27476803-27476857)
chr4 (169-215)||(27502113-27502159)
chr4 (169-215)||(27505680-27505726)
chr4 (162-215)||(27516580-27516633)
chr4 (172-215)||(27567371-27567414)
chr4 (169-215)||(27469576-27469622)
chr4 (138-215)||(27507760-27507837)
chr4 (174-215)||(27559223-27559264)
[»] chr5 (2 HSPs)
chr5 (161-215)||(1759368-1759422)
chr5 (155-215)||(1754206-1754265)
[»] chr3 (5 HSPs)
chr3 (160-215)||(55084902-55084957)
chr3 (161-215)||(38028736-38028790)
chr3 (161-215)||(38040051-38040105)
chr3 (161-215)||(38036763-38036817)
chr3 (175-215)||(48840696-48840736)
[»] chr8 (1 HSPs)
chr8 (161-215)||(21604724-21604778)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 27444618 - 27444818
Alignment:
Q  15 atcatctcacccagttgtttttctatttatctttcactgtcaaaaggtagactaaaatgaaaaatatgtaagtgccttctgtacaattttgcctaaaata 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444618 atcatctcactcagttgtttttctatttatctttcactgtcaaaaggtagactaaaatgaaaaatatgtaagtgccttctgtacaattttgcctaaaata 27444717  T
Q  115 atctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444718 atctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccca 27444817  T
Q  215 t 215  Q
    |    
T  27444818 t 27444818  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 27431039 - 27431169
Alignment:
Q  82 gtaagtgccttctgtacaattttgcctaaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaa 181  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27431039 gtaagtgcctgctgtacaatttttcctcaaataatctatttcagttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaa 27431138  T
Q  182 cgtcttctctgcaaggaattgtgagaccacc 212  Q
    |||||||||||||||||||||||||||||||    
T  27431139 cgtcttctctgcaaggaattgtgagaccacc 27431169  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 27554496 - 27554427
Alignment:
Q  144 ttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  27554496 ttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactaccc 27554427  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 27526074 - 27526134
Alignment:
Q  153 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccc 213  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  27526074 attcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccaccc 27526134  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 27474070 - 27474008
Alignment:
Q  153 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||| |||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||    
T  27474070 attcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccat 27474008  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27480071 - 27480017
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  27480071 gagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccat 27480017  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 27513738 - 27513800
Alignment:
Q  153 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||    
T  27513738 attcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccat 27513800  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 27498591 - 27498531
Alignment:
Q  155 tcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||||||    
T  27498591 tcaaacgagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccat 27498531  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 27466999 - 27466937
Alignment:
Q  153 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||| | |||||| || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  27466999 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccat 27466937  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27487153 - 27487099
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||||||||||| ||||||| |||||||||| || |||||||||||    
T  27487153 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccat 27487099  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 27523373 - 27523427
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||||||||||| ||||||| |||||||||| || |||||||||||    
T  27523373 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccat 27523427  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 27557727 - 27557605
Alignment:
Q  90 cttctgtacaattttgcctaaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttct 189  Q
    ||||||||||| |||||||||||||||||||||||| | |||| |  |||| | | || ||  |  ||| || ||||| |||||||||||||| ||||||    
T  27557727 cttctgtacaaatttgcctaaaataatctatgtcagatacttctt--gaaggtct-agaacctacacaagcgcgaagtgatatctaagaaaacatcttct 27557631  T
Q  190 ctgcaaggaattgtgagaccacccat 215  Q
    ||||| ||||| ||||||||||||||    
T  27557630 ctgcatggaatagtgagaccacccat 27557605  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 27501536 - 27501435
Alignment:
Q  112 ataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccac 211  Q
    |||||||||||||| ||||||  |  |||  ||||||||  | |||||| |||||| ||||||||||| | ||||||||| |||||||| ||||||||||    
T  27501536 ataatctatgtcagctccttctaccaaagggattagcacctactcaaacaagaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccac 27501437  T
Q  212 cc 213  Q
    ||    
T  27501436 cc 27501435  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27460640 - 27460594
Alignment:
Q  169 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  27460640 atatccaagaaaatgtcttctctgcaaggaatggtgagaccacccat 27460594  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27476857 - 27476803
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||| |||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  27476857 gagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccat 27476803  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 27502113 - 27502159
Alignment:
Q  169 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  27502113 atatctaagaaaatgtcttctctgcaaggaatagttagaccacccat 27502159  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 27505680 - 27505726
Alignment:
Q  169 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||    
T  27505680 atatctaagaaaatctcttctctgcaaggaatagtgagaccacccat 27505726  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 27516580 - 27516633
Alignment:
Q  162 agaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||| |||||||||||||| |||||| |||||||||| |||||||| |||||    
T  27516580 agaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccat 27516633  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 27567414 - 27567371
Alignment:
Q  172 tctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||    
T  27567414 tctaagaaagcatcttcgctgcaaggaattgtgagaccacccat 27567371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27469622 - 27469576
Alignment:
Q  169 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||||||||||  ||||||||||||||||| || |||||||||||    
T  27469622 atatctaagaaaatttcttctctgcaaggaatagttagaccacccat 27469576  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 27507760 - 27507837
Alignment:
Q  138 aagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||| |||||||  | |||| |||||||| |||||||||||||  ||||||   ||||||||||| |||||||||||    
T  27507760 aagatgttagcacctactcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccat 27507837  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 27559223 - 27559264
Alignment:
Q  174 taagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||| | ||||| ||||||||||||||||||||||||||    
T  27559223 taagaaagcatcttcactgcaaggaattgtgagaccacccat 27559264  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 1759422 - 1759368
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||    
T  1759422 gagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccat 1759368  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1754206 - 1754265
Alignment:
Q  155 tcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||| |||||||| ||||||||||||| || |||||| |||||||| ||||||||||||||    
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccat 1754265  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 55084957 - 55084902
Alignment:
Q  160 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||||||||||  |||||||| |||||| |||||||||||||||| ||||||||    
T  55084957 cgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccat 55084902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 38028736 - 38028790
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || |||||    
T  38028736 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccat 38028790  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 38040051 - 38040105
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || |||||    
T  38040051 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccat 38040105  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 38036763 - 38036817
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||  |||||||||| |||| |||||||||||||||| || |||||    
T  38036763 gagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccat 38036817  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 48840696 - 48840736
Alignment:
Q  175 aagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  48840696 aagaaaacatcttctgtgcaaggaattgtgaggccacccat 48840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 21604724 - 21604778
Alignment:
Q  161 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 215  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || |||||    
T  21604724 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccat 21604778  T

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