View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3845_high_5 (Length: 482)
Name: NF3845_high_5
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3845_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 243 - 472
Target Start/End: Complemental strand, 4809496 - 4809267
Alignment:
| Q |
243 |
tccataaagttttaatgtcaacaattattgttttgaagataaagtattatttatggatttattaacatgtctcttttagcacaagttacagtcacctttt |
342 |
Q |
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| T |
4809496 |
tccataaagttttaatgtcaacaattattgttttgaagataatgtattatttatggatttattaacatgtctcttttggcacaagttacagtcacctttt |
4809397 |
T |
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| Q |
343 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcttgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
442 |
Q |
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| T |
4809396 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcatgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
4809297 |
T |
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| Q |
443 |
catttccttttatcagtagacacccctttg |
472 |
Q |
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| T |
4809296 |
catttccttttatcagtagacacccctttg |
4809267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 4831811 - 4831722
Alignment:
| Q |
155 |
tacatgaaaaaagaaaagtctgcactaactttgtttatattcacatatgtctagtgtctaatctccaatcttattgatacaatattactc |
244 |
Q |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtttatattcacatatgtctagtgtctaatcttcaatcttatcgatacaatattactc |
4831722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4809569 - 4809490
Alignment:
| Q |
18 |
ttattttccttaggatcaaccacataattagatccttgtttctgtcattgttgaattccttgcccaattaacttgcataa |
97 |
Q |
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| T |
4809569 |
ttattttccttaggatcaactaaataattagatccttgtttctgtcattgttgaattccttgcccaattaacttccataa |
4809490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 4834184 - 4834092
Alignment:
| Q |
98 |
ttattttctttatattaacat-ttacaatcagagattggtgattgtttgggaaatttatacatgaaaaaagaaaagtctgcactaactttgtt |
189 |
Q |
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| T |
4834184 |
ttattttctatatattaacatgttacaattagagattggtgattgtttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgtt |
4834092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 27511091 - 27511058
Alignment:
| Q |
19 |
tattttccttaggatcaaccacataattagatcc |
52 |
Q |
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| T |
27511091 |
tattttccttaggatcaaccacataattagatcc |
27511058 |
T |
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