View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3845_high_9 (Length: 354)

Name: NF3845_high_9
Description: NF3845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3845_high_9
NF3845_high_9
[»] chr7 (15 HSPs)
chr7 (1-340)||(4864693-4865032)
chr7 (17-340)||(4711091-4711411)
chr7 (134-340)||(4654264-4654473)
chr7 (17-278)||(4637684-4637942)
chr7 (134-336)||(4845130-4845335)
chr7 (134-325)||(4782950-4783144)
chr7 (134-325)||(4815379-4815573)
chr7 (1-321)||(4673490-4673810)
chr7 (155-286)||(4644514-4644648)
chr7 (153-340)||(4696318-4696505)
chr7 (17-105)||(4644692-4644780)
chr7 (35-93)||(4845037-4845095)
chr7 (18-107)||(4654494-4654583)
chr7 (19-107)||(4696190-4696278)
chr7 (200-279)||(4663525-4663604)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 4865032 - 4864693
Alignment:
Q  1 aacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4865032 aacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttt 4864933  T
Q  101 tcctattcnnnnnnnnagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaacaaatactaccttagataaacg 200  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4864932 tcctattcttttttttagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctcctcaacaaatactaccttagataaacg 4864833  T
Q  201 aatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864832 aatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttca 4864733  T
Q  301 aacatcgaaattccatacacaaccgcgcgtatctctctct 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4864732 aacatcgaaattccatacacaaccgcgcgtatctctctct 4864693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 4711091 - 4711411
Alignment:
Q  17 cttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctattcnnnnnnnn 116  Q
    ||||||||| || || ||||| ||||||||||||||| |||||| | ||| || |||||||||| |||||||||||||||  ||| || ||             
T  4711091 cttcttcactctattttcacataactatggcaaactccataaacgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctct 4711190  T
Q  117 agtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggt 213  Q
    ||| ||||| |||      |||| |||||||| || ||||||||||  |||||||| | ||||||| |||||   ||||||||  |||||||||||||||    
T  4711191 agttgctaactca------tacaaccctgattacaatttagccatcaattgtggcttctcaacaaacactactgccttagatagtcgaatttgggttggt 4711284  T
Q  214 gataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 313  Q
    |||||||||||||||  |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||| || ||||| ||||    
T  4711285 gataatattgataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattc 4711384  T
Q  314 catacacaaccgcgcgtatctctctct 340  Q
    ||  |||||||||||||||||||||||    
T  4711385 cactcacaaccgcgcgtatctctctct 4711411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 134 - 340
Target Start/End: Complemental strand, 4654473 - 4654264
Alignment:
Q  134 catacagccctgatttcagtttagccatcggttgtggctccacaacaaa---tactaccttagataaacgaatttgggttggtgataatattgataacaa 230  Q
    |||||| |||||||| || |||||| |||| ||||||||||  |||| |   ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  4654473 catacaaccctgattacaatttagctatcgattgtggctccctaacagacactactaccttagataaacgaatttggattggtgagaatattgataacaa 4654374  T
Q  231 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgt 330  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||| |||| ||| |||||||   ||||| |   ||||||||| ||||||||| |||    
T  4654373 aaatatctttactttcattgaaccaaaaaccacgaacccatctcttacaacaccacgtagttccctctcaaatactcaaattccattcacaaccgcacgt 4654274  T
Q  331 atctctctct 340  Q
    ||||||||||    
T  4654273 atctctctct 4654264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 4637942 - 4637684
Alignment:
Q  17 cttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctattcnnnnnnnn 116  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||| ||  ||||||| ||||||| | ||||||| ||| |||| ||| |             
T  4637942 cttcttcactctcttctcacacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctacttttcccttt 4637843  T
Q  117 agtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaaca---aatactaccttagataaacgaatttgggttggt 213  Q
    ||| ||||| |||      |||| |||||||| || ||||||||||  ||||||||||  |||    |||||| ||||||||||||||||||||||||||    
T  4637842 agttgctaactca------tacaaccctgattacaatttagccatcaattgtggctccttaaccgacaatactgccttagataaacgaatttgggttggt 4637749  T
Q  214 gataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaa 278  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4637748 gataatattaataacaaaaatctctttactttcattgaaccaaaaaccacaaacccatcttttaa 4637684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 134 - 336
Target Start/End: Original strand, 4845130 - 4845335
Alignment:
Q  134 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatacta---ccttagataaacgaatttgggttggtgataatattgataacaa 230  Q
    |||||| |||||||| || ||||||||||  |||||| ||| ||||||| | |    |||||||||||||||||||| ||||||||||||||||||||      
T  4845130 catacaaccctgattacaatttagccatcaattgtggttcctcaacaaacaatgttgccttagataaacgaatttggattggtgataatattgataactc 4845229  T
Q  231 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgt 330  Q
    |||||||||||| |||||||||| |||||||||||| |||||| ||||| |||| |||| ||||  ||| || ||| ||||||||| ||||||||||| |    
T  4845230 aaatctctttaccttcattgaaccaaaaaccacaaatccatcttttaaatcatctcctaattccctttccaatatccaaattccattcacaaccgcgcat 4845329  T
Q  331 atctct 336  Q
    ||||||    
T  4845330 atctct 4845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 325
Target Start/End: Original strand, 4782950 - 4783144
Alignment:
Q  134 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaa 230  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||   ||| |||  |||||||||||||| |||||| |||||||||      
T  4782950 catacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactc 4783049  T
Q  231 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccg 325  Q
     ||||||||| | |||||||||| |||||  |||||||||||||||||||||  ||||| ||||   ||||| ||| ||||||||| ||||||||    
T  4783050 taatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatatccaaattccattcacaaccg 4783144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 134 - 325
Target Start/End: Original strand, 4815379 - 4815573
Alignment:
Q  134 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaa 230  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||   ||| |||  |||||||||||||| |||||| |||||||||      
T  4815379 catacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactc 4815478  T
Q  231 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccg 325  Q
     ||||||||| | |||||||||| |||||  |||||||||||||||||||||  ||||| ||||   ||||| | | ||||||||| ||||||||    
T  4815479 taatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatacccaaattccattcacaaccg 4815573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 4673810 - 4673490
Alignment:
Q  1 aacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttt 100  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||  |||||| ||||||||||||||| | ||| |||    
T  4673810 aacaacagaatcaacccttcttcaccctcttctcacacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctactaccgctcattt 4673711  T
Q  101 tcctattcnnnnnnnnagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaacaaata---ctaccttagataa 197  Q
    | || ||         ||| ||||  |||      ||||  ||   || || ||||||||||  |||||| ||| ||||||| |   ||||||| |||||    
T  4673710 tgctcttgttccctctagttgctacctca------tacaaaccaatttacaatttagccatcaattgtggttcctcaacaaacaatgctaccttcgataa 4673617  T
Q  198 acgaatttgggttggtgataata---ttgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttcc 294  Q
     ||||| ||||||||||||||||   || |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||||| ||||    
T  4673616 ccgaatgtgggttggtgataataatattaataacacaaatctctttactttcattgaaccaaaaaccacatacccatctcttacaacacaacctaattcc 4673517  T
Q  295 gcttcaaacatcgaaattccatacaca 321  Q
       ||||| ||| || |||||||||||    
T  4673516 ctctcaaatatccaagttccatacaca 4673490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 4644648 - 4644514
Alignment:
Q  155 tagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaaaaatctctttactttcattga 251  Q
    |||||||  ||||||||||| |||| || |||||   ||||||||  |||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  4644648 tagccattagttgtggctcctcaacgaacactactgccttagatagtcgaatttgggttggtgataataatgataacacaaaactctttactttcattga 4644549  T
Q  252 acaaaaaaccacaaacccatctcttaaaacatcac 286  Q
    || ||||||||| || ||||||| |||||||||||    
T  4644548 accaaaaaccactaatccatctcctaaaacatcac 4644514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 340
Target Start/End: Original strand, 4696318 - 4696505
Alignment:
Q  153 tttagccatcggttgtggctccacaacaaatactaccttagataaacgaatttgggttggtgataatattgataacaaaaatctctttactttcattgaa 252  Q
    ||||||||||  |||||||||| || || | |||||||| || |||||||| |||||||||||||||| |||||||| ||| |||||| | |||| ||||    
T  4696318 tttagccatcaattgtggctcctcatcagacactaccttcgacaaacgaatatgggttggtgataataatgataacacaaaactcttttccttcaatgaa 4696417  T
Q  253 caaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgtatctctctct 340  Q
    | ||||||||||||| ||||||||| || | ||||||   ||   ||||| ||| ||||||||| ||||||||| ||| |||||||||    
T  4696418 ccaaaaaccacaaacacatctcttacaataccacctaacaccctctcaaatatccaaattccattcacaaccgcacgtgtctctctct 4696505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 4644780 - 4644692
Alignment:
Q  17 cttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttccta 105  Q
    ||||||||| ||||||||||||||||||||||||| | |||||||| |||  |||||| ||||||| | |||| |||||| |||| |||    
T  4644780 cttcttcactctcttctcacacaactatggcaaacaccataaacaaaaaaaattacacaaaaatcagcatactttctctcattttgcta 4644692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 4845037 - 4845095
Alignment:
Q  35 acacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatct 93  Q
    ||||||||||| ||||||| |||||||| ||| || |||||||||||||||||||||||    
T  4845037 acacaactatgccaaactccataaacaaaaaatttcacactaaaatcaccctactatct 4845095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 4654583 - 4654494
Alignment:
Q  18 ttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt 107  Q
    |||||||| |||||||||||||  |||||||||||| |||||||| ||  ||||||| ||||| | | ||||||||||| |||| |||||    
T  4654583 ttcttcacactcttctcacacagatatggcaaactccataaacaaaaacatttacacaaaaatgagcatactatctctctttttgctatt 4654494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 4696190 - 4696278
Alignment:
Q  19 tcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt 107  Q
    ||||||| ||||| ||| | ||||||||||||||| | |||||| ||| || |||||||||||| ||| ||||||||| |||| |||||    
T  4696190 tcttcactctcttatcagagaactatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctatt 4696278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 4663604 - 4663525
Alignment:
Q  200 gaatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaa 279  Q
    ||||||||||||||||||||| |||||||| | | |||||| ||||| |||| | |||||| | ||| ||||||||||||    
T  4663604 gaatttgggttggtgataataatgataacacagaactcttttctttccttgagccaaaaacaaaaaatccatctcttaaa 4663525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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